miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 47925 0.69 0.60514
Target:  5'- gCGCAcgGGCAG-CGGgCUCGCCcCGGg -3'
miRNA:   3'- -GCGUugCCGUUaGUUgGAGCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 47724 0.69 0.601806
Target:  5'- aCGCGcuCGGCAauucuGUCGGCCUgcagcuguucaaagCGCCgACGGg -3'
miRNA:   3'- -GCGUu-GCCGU-----UAGUUGGA--------------GCGG-UGCC- -5'
24112 3' -53.6 NC_005263.2 + 47414 0.66 0.798742
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 47379 1.1 0.001183
Target:  5'- gCGCAACGGCAAUCAACCUCGCCACGGc -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 46984 0.67 0.737282
Target:  5'- gCGCAgcACGGCGcg-GACUUCGCgCGCGa -3'
miRNA:   3'- -GCGU--UGCCGUuagUUGGAGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 45820 0.68 0.682973
Target:  5'- gGCcACGGCGcaCGACCU-GCCgACGGc -3'
miRNA:   3'- gCGuUGCCGUuaGUUGGAgCGG-UGCC- -5'
24112 3' -53.6 NC_005263.2 + 45769 0.66 0.802638
Target:  5'- gCGCAACGGCcgcacgGugCUCGCguuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 45701 0.67 0.704927
Target:  5'- cCGCuguACGGCGAccaagCGACCgccggcgcCGUCAUGGg -3'
miRNA:   3'- -GCGu--UGCCGUUa----GUUGGa-------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 45382 0.66 0.768661
Target:  5'- uGUGACGGgGAcgaaCAAUCUCGCCgACGa -3'
miRNA:   3'- gCGUUGCCgUUa---GUUGGAGCGG-UGCc -5'
24112 3' -53.6 NC_005263.2 + 45216 0.76 0.248027
Target:  5'- aCGUcuCGGCcaacAUCAGCCUCGCCGCu- -3'
miRNA:   3'- -GCGuuGCCGu---UAGUUGGAGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 45060 0.68 0.693981
Target:  5'- uCGuCAACGGCGGUCAACU--GCCguACGa -3'
miRNA:   3'- -GC-GUUGCCGUUAGUUGGagCGG--UGCc -5'
24112 3' -53.6 NC_005263.2 + 44929 0.83 0.091323
Target:  5'- gCGCAGCGGCAGUUAuuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUu-GGaGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 44665 0.67 0.704927
Target:  5'- uGC-ACGcGCAgGUCAACCaggUCGCgACGGc -3'
miRNA:   3'- gCGuUGC-CGU-UAGUUGG---AGCGgUGCC- -5'
24112 3' -53.6 NC_005263.2 + 44403 0.7 0.560959
Target:  5'- aCGCGcGCGGCAuuggcGUCGACgUCGaaGCGGc -3'
miRNA:   3'- -GCGU-UGCCGU-----UAGUUGgAGCggUGCC- -5'
24112 3' -53.6 NC_005263.2 + 44165 0.66 0.75833
Target:  5'- uGCAgaACGGCGccaaccugccgGUCGGCCUgcCGCCAUu- -3'
miRNA:   3'- gCGU--UGCCGU-----------UAGUUGGA--GCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 44020 0.76 0.254592
Target:  5'- cCGCu-CGGCAAggguggCGACUUCGCCGCGu -3'
miRNA:   3'- -GCGuuGCCGUUa-----GUUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 43480 0.66 0.768661
Target:  5'- uCGCGAUGGCGcUCAauuacggcACCUCGaagcugccggCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUuAGU--------UGGAGCg---------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 43243 0.75 0.304583
Target:  5'- aGCGGCGGCAG-CGGCaUCGgCACGGc -3'
miRNA:   3'- gCGUUGCCGUUaGUUGgAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 42903 0.66 0.778847
Target:  5'- uCGCGACGGUAGgacGCCgCGCCugcaGGc -3'
miRNA:   3'- -GCGUUGCCGUUaguUGGaGCGGug--CC- -5'
24112 3' -53.6 NC_005263.2 + 42497 0.67 0.737282
Target:  5'- uGCAaacuGCcGCA--CGGCCUCGCCguGCGGa -3'
miRNA:   3'- gCGU----UGcCGUuaGUUGGAGCGG--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.