miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 17139 0.67 0.715801
Target:  5'- gGCuucAUGGUcGUCGACgUCGgCACGGc -3'
miRNA:   3'- gCGu--UGCCGuUAGUUGgAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17181 0.68 0.649695
Target:  5'- gCGCAgcucGCGGCGuac-GCCgUCGCCGCGc -3'
miRNA:   3'- -GCGU----UGCCGUuaguUGG-AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17277 0.66 0.757289
Target:  5'- -uCGACGGuCAAgcaGACCuggcgcgaggcagUCGCCACGGc -3'
miRNA:   3'- gcGUUGCC-GUUag-UUGG-------------AGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17501 0.69 0.594036
Target:  5'- gCGCGGCGcGuCGAUCGAUCagGCgGCGGc -3'
miRNA:   3'- -GCGUUGC-C-GUUAGUUGGagCGgUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17654 0.69 0.581861
Target:  5'- gCGCuACGGC-AUCGACC-CGCguuuuggCACGGu -3'
miRNA:   3'- -GCGuUGCCGuUAGUUGGaGCG-------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17752 0.67 0.747866
Target:  5'- gCGcCGGCGGCAGcgCGGCCgCGCU-CGGc -3'
miRNA:   3'- -GC-GUUGCCGUUa-GUUGGaGCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 17805 0.66 0.788878
Target:  5'- gCGC-AUGGCAAggCGGCCgaggaUGCCGCGc -3'
miRNA:   3'- -GCGuUGCCGUUa-GUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18455 0.79 0.179764
Target:  5'- cCGCAACGGUGugucguUCAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 18520 0.66 0.808427
Target:  5'- uCGCGAUGgacGCGAUCAaagcgGCUcgCGCCGCGu -3'
miRNA:   3'- -GCGUUGC---CGUUAGU-----UGGa-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18593 0.66 0.778847
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 18613 0.72 0.417385
Target:  5'- cCGCAGCGGCGuucgcggcagguggCAACCcgggCGCCGCuGGc -3'
miRNA:   3'- -GCGUUGCCGUua------------GUUGGa---GCGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 18780 0.74 0.361776
Target:  5'- uCGCGcUGGUuAUCGugCUCGCCGCGc -3'
miRNA:   3'- -GCGUuGCCGuUAGUugGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 19101 0.66 0.798742
Target:  5'- gCGCAACGcacugcCGGUCGGCCgCGCCGagcgcaucgcCGGg -3'
miRNA:   3'- -GCGUUGCc-----GUUAGUUGGaGCGGU----------GCC- -5'
24112 3' -53.6 NC_005263.2 + 19786 0.66 0.768661
Target:  5'- gGCu-CGGCGGcCGACCagauucgCGCCGCGa -3'
miRNA:   3'- gCGuuGCCGUUaGUUGGa------GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 19879 0.71 0.517708
Target:  5'- gCGCGGCGagcgcggccgauGCAGgccacCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC------------CGUUa----GUUG--GAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 19918 0.69 0.60514
Target:  5'- gGCAACGGCAugCAGaaggCGCCGCGc -3'
miRNA:   3'- gCGUUGCCGUuaGUUgga-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20004 0.71 0.49658
Target:  5'- cCGuCAACGacGCGAUCGGCCgCGCCaacacACGGg -3'
miRNA:   3'- -GC-GUUGC--CGUUAGUUGGaGCGG-----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 20091 0.67 0.704927
Target:  5'- cCG-AAUGGCGucugGUCGACCagcgUCGCCGCGc -3'
miRNA:   3'- -GCgUUGCCGU----UAGUUGG----AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20138 0.69 0.582966
Target:  5'- gCGCGACGGUA--CGGCCgUCGCgC-CGGg -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGG-AGCG-GuGCC- -5'
24112 3' -53.6 NC_005263.2 + 20485 0.66 0.798742
Target:  5'- gGCcAUGaGUggUCGACCgucgCGCCGCa- -3'
miRNA:   3'- gCGuUGC-CGuuAGUUGGa---GCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.