miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 25369 0.67 0.402255
Target:  5'- -uCGGCGGCcUGAUCgguGCGCUCaugcGCCGc -3'
miRNA:   3'- ccGCCGCCGuGCUAG---CGCGAG----UGGCu -5'
24112 5' -60.4 NC_005263.2 + 12118 0.67 0.393418
Target:  5'- -aCGGCcugaauGCACaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
24112 5' -60.4 NC_005263.2 + 19790 0.67 0.366835
Target:  5'- cGGCGGCcGaccagauucgcgcCGCGAUCGCGCaguuuCCGAa -3'
miRNA:   3'- -CCGCCGcC-------------GUGCUAGCGCGagu--GGCU- -5'
24112 5' -60.4 NC_005263.2 + 17588 0.67 0.367673
Target:  5'- cGGCGGCGGCcaaGG-CGCGCagggCAUCu- -3'
miRNA:   3'- -CCGCCGCCGug-CUaGCGCGa---GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 43302 0.67 0.367673
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 16431 0.67 0.367673
Target:  5'- cGGCGcUGGCGCGG-CGgGCcUCGCUGGc -3'
miRNA:   3'- -CCGCcGCCGUGCUaGCgCG-AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9210 0.67 0.376125
Target:  5'- gGGCGGCGcucGUACGG-CGCGCgguacguguCCGAc -3'
miRNA:   3'- -CCGCCGC---CGUGCUaGCGCGagu------GGCU- -5'
24112 5' -60.4 NC_005263.2 + 29070 0.67 0.383843
Target:  5'- cGCGGCccgcuacGGCGCGAUagGCGCgguUCAgCGAc -3'
miRNA:   3'- cCGCCG-------CCGUGCUAg-CGCG---AGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 26216 0.67 0.384707
Target:  5'- uGCGGCGGC-CGuUCGCGaa-ACCa- -3'
miRNA:   3'- cCGCCGCCGuGCuAGCGCgagUGGcu -5'
24112 5' -60.4 NC_005263.2 + 12116 0.67 0.384707
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
24112 5' -60.4 NC_005263.2 + 14110 0.67 0.375274
Target:  5'- cGCGGCGGUcgccgucGCGAUCGUaGCcgCAgCGGc -3'
miRNA:   3'- cCGCCGCCG-------UGCUAGCG-CGa-GUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 38685 0.68 0.330501
Target:  5'- cGGCccgGGCGGCACGGgcaagucguacuucgUCGagcaGCUgGCCGc -3'
miRNA:   3'- -CCG---CCGCCGUGCU---------------AGCg---CGAgUGGCu -5'
24112 5' -60.4 NC_005263.2 + 9002 0.68 0.319751
Target:  5'- -aCGGC-GCACGAgUCGCGCguacUCGCCGu -3'
miRNA:   3'- ccGCCGcCGUGCU-AGCGCG----AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 18932 0.68 0.319751
Target:  5'- cGC-GCGGCACGA--GCGCUCgagcgcGCCGGu -3'
miRNA:   3'- cCGcCGCCGUGCUagCGCGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 45168 0.68 0.327403
Target:  5'- cGGCGGCGGC--GAUgGCGCauUCG-CGAg -3'
miRNA:   3'- -CCGCCGCCGugCUAgCGCG--AGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 33971 0.68 0.322796
Target:  5'- aGGCGGCcgcgcuggccgcugcGGCuACGAUCGCGaCggcgacCGCCGc -3'
miRNA:   3'- -CCGCCG---------------CCG-UGCUAGCGC-Ga-----GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 24099 0.68 0.327403
Target:  5'- cGGCGGCGGCuACGugcCGgGCUaucaguacggCACCa- -3'
miRNA:   3'- -CCGCCGCCG-UGCua-GCgCGA----------GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 12484 0.68 0.34311
Target:  5'- -cCGGCGGCGCGcAUUGCgGCauccugcgCGCCGGc -3'
miRNA:   3'- ccGCCGCCGUGC-UAGCG-CGa-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 21780 0.68 0.351164
Target:  5'- -aCGaGUGGCGCGAaucacUCGCGCaUCGCCc- -3'
miRNA:   3'- ccGC-CGCCGUGCU-----AGCGCG-AGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 14470 0.68 0.351164
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGa -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.