Results 21 - 40 of 149 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 30821 | 0.66 | 0.437895 |
Target: 5'- cGGCGGacaGGUAgaccuugUGAcCGgGUUCGCCGAu -3' miRNA: 3'- -CCGCCg--CCGU-------GCUaGCgCGAGUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 3769 | 0.66 | 0.438833 |
Target: 5'- gGGCaGCGGCACGGU-GUuCUCccacacGCCGAc -3' miRNA: 3'- -CCGcCGCCGUGCUAgCGcGAG------UGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 20898 | 0.66 | 0.448271 |
Target: 5'- aGCGGCGGUgcaacgACGAUCaaCGC-CGCCa- -3' miRNA: 3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 42323 | 0.66 | 0.448271 |
Target: 5'- cGGCGcaGCGGCGCGugCGCGaCUaucaACCGu -3' miRNA: 3'- -CCGC--CGCCGUGCuaGCGC-GAg---UGGCu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 15313 | 0.66 | 0.448271 |
Target: 5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3' miRNA: 3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 5224 | 0.66 | 0.420304 |
Target: 5'- aGCGcGCGGCACGccAUUGaCGCgaucaggCGCCGu -3' miRNA: 3'- cCGC-CGCCGUGC--UAGC-GCGa------GUGGCu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 10871 | 0.66 | 0.414838 |
Target: 5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcguaUCGCCGc -3' miRNA: 3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 35450 | 0.66 | 0.408516 |
Target: 5'- cGGCGcGcCGGCcgacgacgauaucgACGG-CGUGCUCACCu- -3' miRNA: 3'- -CCGC-C-GCCG--------------UGCUaGCGCGAGUGGcu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 24833 | 0.66 | 0.411218 |
Target: 5'- cGGcCGGCGGCaacgGCGGUgccggUGCGCcaGCCGGc -3' miRNA: 3'- -CC-GCCGCCG----UGCUA-----GCGCGagUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 19395 | 0.66 | 0.411218 |
Target: 5'- cGGCGGCGcgcaGUACGGcaaCGCGCgCGuuGAg -3' miRNA: 3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 43302 | 0.67 | 0.367673 |
Target: 5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3' miRNA: 3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 14110 | 0.67 | 0.375274 |
Target: 5'- cGCGGCGGUcgccgucGCGAUCGUaGCcgCAgCGGc -3' miRNA: 3'- cCGCCGCCG-------UGCUAGCG-CGa-GUgGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 30346 | 0.67 | 0.402255 |
Target: 5'- cGCGuGcCGaGCGCGGcCGCGCUgcCGCCGGc -3' miRNA: 3'- cCGC-C-GC-CGUGCUaGCGCGA--GUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 10156 | 0.67 | 0.367673 |
Target: 5'- cGCGGCaucGGC-CGGUUGCGC--ACCGGc -3' miRNA: 3'- cCGCCG---CCGuGCUAGCGCGagUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 38498 | 0.67 | 0.384707 |
Target: 5'- cGUGGCGcGaCGCGAugaUCGCGCU-GCCGc -3' miRNA: 3'- cCGCCGC-C-GUGCU---AGCGCGAgUGGCu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 31022 | 0.67 | 0.384707 |
Target: 5'- uGCGGCgaGGCGCGGcgUGCGCUgcUCGAg -3' miRNA: 3'- cCGCCG--CCGUGCUa-GCGCGAguGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 16431 | 0.67 | 0.367673 |
Target: 5'- cGGCGcUGGCGCGG-CGgGCcUCGCUGGc -3' miRNA: 3'- -CCGCcGCCGUGCUaGCgCG-AGUGGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 17588 | 0.67 | 0.367673 |
Target: 5'- cGGCGGCGGCcaaGG-CGCGCagggCAUCu- -3' miRNA: 3'- -CCGCCGCCGug-CUaGCGCGa---GUGGcu -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 19790 | 0.67 | 0.366835 |
Target: 5'- cGGCGGCcGaccagauucgcgcCGCGAUCGCGCaguuuCCGAa -3' miRNA: 3'- -CCGCCGcC-------------GUGCUAGCGCGagu--GGCU- -5' |
|||||||
24112 | 5' | -60.4 | NC_005263.2 | + | 28310 | 0.67 | 0.402255 |
Target: 5'- cGCGaucGCGGCGCGAaucuggUCG-GC-CGCCGAg -3' miRNA: 3'- cCGC---CGCCGUGCU------AGCgCGaGUGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home