miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 44431 0.69 0.290493
Target:  5'- aGCGGCacaGGCGauggaagaccUGAagGCGUUCGCCGAa -3'
miRNA:   3'- cCGCCG---CCGU----------GCUagCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 31566 0.7 0.256924
Target:  5'- --aGGCGGCGCGc-CGUGCUCgacaacGCCGAc -3'
miRNA:   3'- ccgCCGCCGUGCuaGCGCGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 11533 0.72 0.191266
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 41752 0.73 0.160437
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGa -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 35749 0.67 0.359353
Target:  5'- aGCGuaGGCGCGggCGCGgUUACUGc -3'
miRNA:   3'- cCGCcgCCGUGCuaGCGCgAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 45168 0.68 0.327403
Target:  5'- cGGCGGCGGC--GAUgGCGCauUCG-CGAg -3'
miRNA:   3'- -CCGCCGCCGugCUAgCGCG--AGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 9716 0.7 0.232411
Target:  5'- cGCuGCGGCGCGcUUGCGCUCguucGCCa- -3'
miRNA:   3'- cCGcCGCCGUGCuAGCGCGAG----UGGcu -5'
24112 5' -60.4 NC_005263.2 + 692 0.73 0.14933
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 6617 0.68 0.319751
Target:  5'- cGGCGGCgcgcucGGCGCGGUCGaGCagUCGCgCGu -3'
miRNA:   3'- -CCGCCG------CCGUGCUAGCgCG--AGUG-GCu -5'
24112 5' -60.4 NC_005263.2 + 39307 0.73 0.145397
Target:  5'- aGGCGcauGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 22506 0.7 0.238349
Target:  5'- cGGCGGCGGUucgGCGGcUGCggccuGCUCgauGCCGAg -3'
miRNA:   3'- -CCGCCGCCG---UGCUaGCG-----CGAG---UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 25898 0.69 0.304122
Target:  5'- cGGCGaCGGCcgcgacguacguaACGGUCGCGUU-GCCGGu -3'
miRNA:   3'- -CCGCcGCCG-------------UGCUAGCGCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9556 0.71 0.209359
Target:  5'- cGGCGcucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 12554 0.72 0.194267
Target:  5'- cGGcCGGCGGCGCcGUagcgcccgcccgCGCGC-CGCCGGg -3'
miRNA:   3'- -CC-GCCGCCGUGcUA------------GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27776 0.72 0.184422
Target:  5'- uGCGGCGGCAgGccaugcuUCGCGCgguacaUCGCCGu -3'
miRNA:   3'- cCGCCGCCGUgCu------AGCGCG------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 40765 0.72 0.170031
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14110 0.67 0.375274
Target:  5'- cGCGGCGGUcgccgucGCGAUCGUaGCcgCAgCGGc -3'
miRNA:   3'- cCGCCGCCG-------UGCUAGCG-CGa-GUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 31481 0.67 0.359353
Target:  5'- cGGCGccuggcccgucaGCGGCGCGAgcugcugcUCGCGCgcgagC-CCGGc -3'
miRNA:   3'- -CCGC------------CGCCGUGCU--------AGCGCGa----GuGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14170 0.68 0.34311
Target:  5'- gGGcCGGCGGC-CGGUgUGCGCgagCugCGu -3'
miRNA:   3'- -CC-GCCGCCGuGCUA-GCGCGa--GugGCu -5'
24112 5' -60.4 NC_005263.2 + 38685 0.68 0.330501
Target:  5'- cGGCccgGGCGGCACGGgcaagucguacuucgUCGagcaGCUgGCCGc -3'
miRNA:   3'- -CCG---CCGCCGUGCU---------------AGCg---CGAgUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.