miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 29326 0.77 0.075457
Target:  5'- cGCGGCGaGCACGAUaaccaGCGCgagCACCGc -3'
miRNA:   3'- cCGCCGC-CGUGCUAg----CGCGa--GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 9716 0.7 0.232411
Target:  5'- cGCuGCGGCGCGcUUGCGCUCguucGCCa- -3'
miRNA:   3'- cCGcCGCCGUGCuAGCGCGAG----UGGcu -5'
24112 5' -60.4 NC_005263.2 + 31566 0.7 0.256924
Target:  5'- --aGGCGGCGCGc-CGUGCUCgacaacGCCGAc -3'
miRNA:   3'- ccgCCGCCGUGCuaGCGCGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47761 0.66 0.45782
Target:  5'- aGGCaucuGGCuGGCGCuuGUCGCGCUCuggcagugcgguGCCGu -3'
miRNA:   3'- -CCG----CCG-CCGUGc-UAGCGCGAG------------UGGCu -5'
24112 5' -60.4 NC_005263.2 + 40765 0.72 0.170031
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44898 0.72 0.170479
Target:  5'- --aGGuCGGCcCGAUcuggcCGCGCUCGCCGAc -3'
miRNA:   3'- ccgCC-GCCGuGCUA-----GCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27776 0.72 0.184422
Target:  5'- uGCGGCGGCAgGccaugcuUCGCGCgguacaUCGCCGu -3'
miRNA:   3'- cCGCCGCCGUgCu------AGCGCG------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 1372 0.72 0.186355
Target:  5'- cGGCGGCGGCcuugaACGAgcgcaugaagcCGCGCUUguacucguagcgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-----UGCUa----------GCGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 12554 0.72 0.194267
Target:  5'- cGGcCGGCGGCGCcGUagcgcccgcccgCGCGC-CGCCGGg -3'
miRNA:   3'- -CC-GCCGCCGUGcUA------------GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 3311 0.71 0.217555
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 27968 0.71 0.20457
Target:  5'- cGGCGcGaCGGC-CGuaccGUCGCGCUUGCCGu -3'
miRNA:   3'- -CCGC-C-GCCGuGC----UAGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 11533 0.72 0.191266
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 39307 0.73 0.145397
Target:  5'- aGGCGcauGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 9556 0.71 0.209359
Target:  5'- cGGCGcucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 692 0.73 0.14933
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 25709 0.72 0.189288
Target:  5'- cGGCGGCGcGUACGuUCGCggccugcccgauGC-CGCCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCG------------CGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 34732 0.71 0.214793
Target:  5'- uGGCGagcaauuGCGGCGCGuguuUCGCGC-CGCCc- -3'
miRNA:   3'- -CCGC-------CGCCGUGCu---AGCGCGaGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 22506 0.7 0.238349
Target:  5'- cGGCGGCGGUucgGCGGcUGCggccuGCUCgauGCCGAg -3'
miRNA:   3'- -CCGCCGCCG---UGCUaGCG-----CGAG---UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 41752 0.73 0.160437
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGa -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 15486 0.72 0.175019
Target:  5'- uGCGGCGGCGCGGUgaGCaucagCACCGGa -3'
miRNA:   3'- cCGCCGCCGUGCUAg-CGcga--GUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.