miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 692 0.73 0.14933
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 1285 0.74 0.127117
Target:  5'- cGGa-GCGGCGCGAaagaUCGCGCUCACg-- -3'
miRNA:   3'- -CCgcCGCCGUGCU----AGCGCGAGUGgcu -5'
24112 5' -60.4 NC_005263.2 + 1372 0.72 0.186355
Target:  5'- cGGCGGCGGCcuugaACGAgcgcaugaagcCGCGCUUguacucguagcgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-----UGCUa----------GCGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 1926 0.66 0.42951
Target:  5'- cGCGuCuGCACGAgCGCGCcggCACCGGc -3'
miRNA:   3'- cCGCcGcCGUGCUaGCGCGa--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 2627 0.66 0.411218
Target:  5'- aGGCcGaCcGCGCGGuucaUCGCGCUUGCCGGc -3'
miRNA:   3'- -CCGcC-GcCGUGCU----AGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 3311 0.71 0.217555
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 3314 0.71 0.20457
Target:  5'- cGCGGCcGCGCGGUguucaacgucugCGCGC-CGCCGGc -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 3769 0.66 0.438833
Target:  5'- gGGCaGCGGCACGGU-GUuCUCccacacGCCGAc -3'
miRNA:   3'- -CCGcCGCCGUGCUAgCGcGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 5224 0.66 0.420304
Target:  5'- aGCGcGCGGCACGccAUUGaCGCgaucaggCGCCGu -3'
miRNA:   3'- cCGC-CGCCGUGC--UAGC-GCGa------GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 5268 0.68 0.319751
Target:  5'- uGauGCGGUACGGgggCGUGCUCAUCa- -3'
miRNA:   3'- cCgcCGCCGUGCUa--GCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 6057 0.68 0.312235
Target:  5'- -uUGGCGGCGCGcuUCaCGCgCGCCGAc -3'
miRNA:   3'- ccGCCGCCGUGCu-AGcGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 6247 0.73 0.145397
Target:  5'- cGCGGCcaGGCGCGGUCGUGC-CGUCGGg -3'
miRNA:   3'- cCGCCG--CCGUGCUAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 6617 0.68 0.319751
Target:  5'- cGGCGGCgcgcucGGCGCGGUCGaGCagUCGCgCGu -3'
miRNA:   3'- -CCGCCG------CCGUGCUAGCgCG--AGUG-GCu -5'
24112 5' -60.4 NC_005263.2 + 7015 0.72 0.183941
Target:  5'- cGGauuGGCGGCGCGAaacgugucgacgaUCGUGCgCGCCGu -3'
miRNA:   3'- -CCg--CCGCCGUGCU-------------AGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 7375 0.68 0.34311
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 7789 0.66 0.438833
Target:  5'- aGGCGGUuccucguaGCACGGguaaCGCGUUauaCGCCGAg -3'
miRNA:   3'- -CCGCCGc-------CGUGCUa---GCGCGA---GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 8395 0.66 0.420304
Target:  5'- cGCGGCccGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 9002 0.68 0.319751
Target:  5'- -aCGGC-GCACGAgUCGCGCguacUCGCCGu -3'
miRNA:   3'- ccGCCGcCGUGCU-AGCGCG----AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 9098 0.68 0.335189
Target:  5'- cGGCauaccCGGCugGAUCGUGUU-GCCGAa -3'
miRNA:   3'- -CCGcc---GCCGugCUAGCGCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9210 0.67 0.376125
Target:  5'- gGGCGGCGcucGUACGG-CGCGCgguacguguCCGAc -3'
miRNA:   3'- -CCGCCGC---CGUGCUaGCGCGagu------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.