miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 47931 0.7 0.238349
Target:  5'- gGGCaGCgggcucgccccgGGCGCgGAUCGCGUgcucgCACCGAa -3'
miRNA:   3'- -CCGcCG------------CCGUG-CUAGCGCGa----GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47761 0.66 0.45782
Target:  5'- aGGCaucuGGCuGGCGCuuGUCGCGCUCuggcagugcgguGCCGu -3'
miRNA:   3'- -CCG----CCG-CCGUGc-UAGCGCGAG------------UGGCu -5'
24112 5' -60.4 NC_005263.2 + 47647 0.75 0.102246
Target:  5'- gGGCGGCGGCACaaacgccgugaaGAUUGCGUUCcgcacuGCCGc -3'
miRNA:   3'- -CCGCCGCCGUG------------CUAGCGCGAG------UGGCu -5'
24112 5' -60.4 NC_005263.2 + 47413 1.1 0.000255
Target:  5'- gGGCGGCGGCACGAUCGCGCUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUAGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47373 0.7 0.263375
Target:  5'- gGGCGGCGcGUuCGAUgCGCGCgagCACaUGAa -3'
miRNA:   3'- -CCGCCGC-CGuGCUA-GCGCGa--GUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 47243 0.66 0.452078
Target:  5'- cGcCGGcCGGCACGAcggguacgcugUcCGCGCUCgguagugacgugcgcGCCGAa -3'
miRNA:   3'- cC-GCC-GCCGUGCU-----------A-GCGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 46292 0.69 0.307789
Target:  5'- cGGaCGGCGGCagcauccaggaacugACGAUCG-GCUCgaacGCCGu -3'
miRNA:   3'- -CC-GCCGCCG---------------UGCUAGCgCGAG----UGGCu -5'
24112 5' -60.4 NC_005263.2 + 45168 0.68 0.327403
Target:  5'- cGGCGGCGGC--GAUgGCGCauUCG-CGAg -3'
miRNA:   3'- -CCGCCGCCGugCUAgCGCG--AGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 44903 0.78 0.062061
Target:  5'- gGGCGGCGGC-CGGgcCG-GCUCACCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUa-GCgCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44898 0.72 0.170479
Target:  5'- --aGGuCGGCcCGAUcuggcCGCGCUCGCCGAc -3'
miRNA:   3'- ccgCC-GCCGuGCUA-----GCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44637 0.66 0.438833
Target:  5'- uGCGGCaGCugaucgagcuGCGccucgaugcGUCGCGCgCGCCGAa -3'
miRNA:   3'- cCGCCGcCG----------UGC---------UAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44568 0.66 0.448271
Target:  5'- cGCGGCacuGCGCuGAUCcCGCUuuaCGCCGAu -3'
miRNA:   3'- cCGCCGc--CGUG-CUAGcGCGA---GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44431 0.69 0.290493
Target:  5'- aGCGGCacaGGCGauggaagaccUGAagGCGUUCGCCGAa -3'
miRNA:   3'- cCGCCG---CCGU----------GCUagCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44385 0.68 0.335189
Target:  5'- cGGCccGGCGuGCGCGAg-GCGCUCAaucaaaccauUCGAa -3'
miRNA:   3'- -CCG--CCGC-CGUGCUagCGCGAGU----------GGCU- -5'
24112 5' -60.4 NC_005263.2 + 43302 0.67 0.367673
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 43245 0.72 0.170479
Target:  5'- cGGCGGCagcggcaucGGCACGGcgCGCGCguacgggcaACCGAc -3'
miRNA:   3'- -CCGCCG---------CCGUGCUa-GCGCGag-------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 42775 0.72 0.193262
Target:  5'- cGGCGGCGugacgauccaGCGCGAagGCGCgaaagacccgaaCGCCGAg -3'
miRNA:   3'- -CCGCCGC----------CGUGCUagCGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 42323 0.66 0.448271
Target:  5'- cGGCGcaGCGGCGCGugCGCGaCUaucaACCGu -3'
miRNA:   3'- -CCGC--CGCCGUGCuaGCGC-GAg---UGGCu -5'
24112 5' -60.4 NC_005263.2 + 41752 0.73 0.160437
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGa -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 41562 0.72 0.194267
Target:  5'- cGUGGCGGCgauGCGAgcuuUCGCGCguaugcgCGCCGc -3'
miRNA:   3'- cCGCCGCCG---UGCU----AGCGCGa------GUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.