miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 44568 0.66 0.448271
Target:  5'- cGCGGCacuGCGCuGAUCcCGCUuuaCGCCGAu -3'
miRNA:   3'- cCGCCGc--CGUG-CUAGcGCGA---GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 19395 0.66 0.411218
Target:  5'- cGGCGGCGcgcaGUACGGcaaCGCGCgCGuuGAg -3'
miRNA:   3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5'
24112 5' -60.4 NC_005263.2 + 35450 0.66 0.408516
Target:  5'- cGGCGcGcCGGCcgacgacgauaucgACGG-CGUGCUCACCu- -3'
miRNA:   3'- -CCGC-C-GCCG--------------UGCUaGCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 2627 0.66 0.411218
Target:  5'- aGGCcGaCcGCGCGGuucaUCGCGCUUGCCGGc -3'
miRNA:   3'- -CCGcC-GcCGUGCU----AGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 38792 0.66 0.411218
Target:  5'- uGGaaGCGGcCACGAgcggcaUCGCugaGCUUGCCGAa -3'
miRNA:   3'- -CCgcCGCC-GUGCU------AGCG---CGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 13566 0.66 0.417565
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 8395 0.66 0.420304
Target:  5'- cGCGGCccGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 27203 0.66 0.423972
Target:  5'- uGGCGGCGuugaucgucguuGCAcCgccgcucgugagcguGAUCGCGC-CGCCGGc -3'
miRNA:   3'- -CCGCCGC------------CGU-G---------------CUAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18704 0.66 0.423972
Target:  5'- cGCGGCaGGCGCGGgcggCaacccuuuccuguaaGCGCgucggCGCCGGg -3'
miRNA:   3'- cCGCCG-CCGUGCUa---G---------------CGCGa----GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 24833 0.66 0.411218
Target:  5'- cGGcCGGCGGCaacgGCGGUgccggUGCGCcaGCCGGc -3'
miRNA:   3'- -CC-GCCGCCG----UGCUA-----GCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 10871 0.66 0.414838
Target:  5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcguaUCGCCGc -3'
miRNA:   3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 5224 0.66 0.420304
Target:  5'- aGCGcGCGGCACGccAUUGaCGCgaucaggCGCCGu -3'
miRNA:   3'- cCGC-CGCCGUGC--UAGC-GCGa------GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 15313 0.66 0.448271
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 42323 0.66 0.448271
Target:  5'- cGGCGcaGCGGCGCGugCGCGaCUaucaACCGu -3'
miRNA:   3'- -CCGC--CGCCGUGCuaGCGC-GAg---UGGCu -5'
24112 5' -60.4 NC_005263.2 + 20898 0.66 0.448271
Target:  5'- aGCGGCGGUgcaacgACGAUCaaCGC-CGCCa- -3'
miRNA:   3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 3769 0.66 0.438833
Target:  5'- gGGCaGCGGCACGGU-GUuCUCccacacGCCGAc -3'
miRNA:   3'- -CCGcCGCCGUGCUAgCGcGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 30821 0.66 0.437895
Target:  5'- cGGCGGacaGGUAgaccuugUGAcCGgGUUCGCCGAu -3'
miRNA:   3'- -CCGCCg--CCGU-------GCUaGCgCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 28418 0.66 0.42951
Target:  5'- aGGCGcCGGCACGcgCGUGaacgUCGCgGGc -3'
miRNA:   3'- -CCGCcGCCGUGCuaGCGCg---AGUGgCU- -5'
24112 5' -60.4 NC_005263.2 + 10577 0.66 0.428583
Target:  5'- uGGcCGGCGGCccauugcuCGAUCugcauGCGCUuggcaagCGCCGGa -3'
miRNA:   3'- -CC-GCCGCCGu-------GCUAG-----CGCGA-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 24210 0.66 0.420304
Target:  5'- cGCgGGCGcGCucACGAgCGCGCUCACg-- -3'
miRNA:   3'- cCG-CCGC-CG--UGCUaGCGCGAGUGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.