miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 47413 1.1 0.000255
Target:  5'- gGGCGGCGGCACGAUCGCGCUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUAGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27382 0.84 0.022354
Target:  5'- cGGCGGCGGC-CGG-CGCGCUgACCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUaGCGCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 20872 0.82 0.036298
Target:  5'- cGGcCGGCGGCGCGAUCaCGCUCA-CGAg -3'
miRNA:   3'- -CC-GCCGCCGUGCUAGcGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 24558 0.78 0.062061
Target:  5'- cGGCGGCGGCugcgccACGGUCG-GCaCGCCGAa -3'
miRNA:   3'- -CCGCCGCCG------UGCUAGCgCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44903 0.78 0.062061
Target:  5'- gGGCGGCGGC-CGGgcCG-GCUCACCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUa-GCgCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18754 0.78 0.072169
Target:  5'- cGGCgcgaucguaGGCGGCGCGGugcucgcgcugguuaUCGUGCUCGCCGc -3'
miRNA:   3'- -CCG---------CCGCCGUGCU---------------AGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 17756 0.77 0.073386
Target:  5'- cGGCGGCaGCGCGGcCGCGCUCGgCa- -3'
miRNA:   3'- -CCGCCGcCGUGCUaGCGCGAGUgGcu -5'
24112 5' -60.4 NC_005263.2 + 29326 0.77 0.075457
Target:  5'- cGCGGCGaGCACGAUaaccaGCGCgagCACCGc -3'
miRNA:   3'- cCGCCGC-CGUGCUAg----CGCGa--GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 17831 0.77 0.079768
Target:  5'- cGCGcGCGGCcCGAUUGCGCagcgcuUCGCCGAc -3'
miRNA:   3'- cCGC-CGCCGuGCUAGCGCG------AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9773 0.77 0.084315
Target:  5'- cGCcGCGuGCACGGUCGCGCgcgCAUCGAu -3'
miRNA:   3'- cCGcCGC-CGUGCUAGCGCGa--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14973 0.77 0.084315
Target:  5'- uGGCuGGCGGCAgCGAUCuGCGCgugacguucugcUCGCCGGc -3'
miRNA:   3'- -CCG-CCGCCGU-GCUAG-CGCG------------AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 16580 0.76 0.09948
Target:  5'- aGGcCGGCGGCGa---CGCGUUCGCCGGg -3'
miRNA:   3'- -CC-GCCGCCGUgcuaGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47647 0.75 0.102246
Target:  5'- gGGCGGCGGCACaaacgccgugaaGAUUGCGUUCcgcacuGCCGc -3'
miRNA:   3'- -CCGCCGCCGUG------------CUAGCGCGAG------UGGCu -5'
24112 5' -60.4 NC_005263.2 + 1285 0.74 0.127117
Target:  5'- cGGa-GCGGCGCGAaagaUCGCGCUCACg-- -3'
miRNA:   3'- -CCgcCGCCGUGCU----AGCGCGAGUGgcu -5'
24112 5' -60.4 NC_005263.2 + 28222 0.74 0.134159
Target:  5'- uGGUGGCcuGCAuCGGcCGCGCUCGCCGc -3'
miRNA:   3'- -CCGCCGc-CGU-GCUaGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 22541 0.74 0.137813
Target:  5'- gGGCGGCGcGgACGccgacGUCGCGCUCGCg-- -3'
miRNA:   3'- -CCGCCGC-CgUGC-----UAGCGCGAGUGgcu -5'
24112 5' -60.4 NC_005263.2 + 38860 0.74 0.137813
Target:  5'- aGCGGCGuCACGGUCGgcaCGUUCGCCGu -3'
miRNA:   3'- cCGCCGCcGUGCUAGC---GCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 27919 0.73 0.145397
Target:  5'- -aCGGCGGCGCGucgcccggCGCGCUCucgucgaugaGCCGGa -3'
miRNA:   3'- ccGCCGCCGUGCua------GCGCGAG----------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 6247 0.73 0.145397
Target:  5'- cGCGGCcaGGCGCGGUCGUGC-CGUCGGg -3'
miRNA:   3'- cCGCCG--CCGUGCUAGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 39307 0.73 0.145397
Target:  5'- aGGCGcauGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.