miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 692 0.73 0.14933
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 24609 0.73 0.14933
Target:  5'- cGGUGGCGGCGCaGGUCaa-UUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUG-CUAGcgcGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 32046 0.73 0.14933
Target:  5'- cGCGGCGGCACGGaCGUGUUUGaCGAu -3'
miRNA:   3'- cCGCCGCCGUGCUaGCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 27667 0.73 0.160012
Target:  5'- cGGCGGCGGCaagcACGGccgccuucuugugCGCGCcggCGCCGGc -3'
miRNA:   3'- -CCGCCGCCG----UGCUa------------GCGCGa--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 41752 0.73 0.160437
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGa -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 40765 0.72 0.170031
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 43245 0.72 0.170479
Target:  5'- cGGCGGCagcggcaucGGCACGGcgCGCGCguacgggcaACCGAc -3'
miRNA:   3'- -CCGCCG---------CCGUGCUa-GCGCGag-------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44898 0.72 0.170479
Target:  5'- --aGGuCGGCcCGAUcuggcCGCGCUCGCCGAc -3'
miRNA:   3'- ccgCC-GCCGuGCUA-----GCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 15486 0.72 0.175019
Target:  5'- uGCGGCGGCGCGGUgaGCaucagCACCGGa -3'
miRNA:   3'- cCGCCGCCGUGCUAg-CGcga--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 7015 0.72 0.183941
Target:  5'- cGGauuGGCGGCGCGAaacgugucgacgaUCGUGCgCGCCGu -3'
miRNA:   3'- -CCg--CCGCCGUGCU-------------AGCGCGaGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 27776 0.72 0.184422
Target:  5'- uGCGGCGGCAgGccaugcuUCGCGCgguacaUCGCCGu -3'
miRNA:   3'- cCGCCGCCGUgCu------AGCGCG------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 20359 0.72 0.184422
Target:  5'- cGGgGGCGcGCAuggcUGAUCGCGCgccgaCACCGu -3'
miRNA:   3'- -CCgCCGC-CGU----GCUAGCGCGa----GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 32099 0.72 0.184422
Target:  5'- cGGCGGCgucGGUGCGAUCgaGCGCUUcgagAUCGAu -3'
miRNA:   3'- -CCGCCG---CCGUGCUAG--CGCGAG----UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 1372 0.72 0.186355
Target:  5'- cGGCGGCGGCcuugaACGAgcgcaugaagcCGCGCUUguacucguagcgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-----UGCUa----------GCGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9603 0.72 0.189288
Target:  5'- uGCGGCaGCGCGAucaucgcgUCGCGC-CACgGAu -3'
miRNA:   3'- cCGCCGcCGUGCU--------AGCGCGaGUGgCU- -5'
24112 5' -60.4 NC_005263.2 + 25709 0.72 0.189288
Target:  5'- cGGCGGCGcGUACGuUCGCggccugcccgauGC-CGCCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCG------------CGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 11533 0.72 0.191266
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 42775 0.72 0.193262
Target:  5'- cGGCGGCGugacgauccaGCGCGAagGCGCgaaagacccgaaCGCCGAg -3'
miRNA:   3'- -CCGCCGC----------CGUGCUagCGCGa-----------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 16380 0.72 0.194267
Target:  5'- cGGCGGCGGCcUGAUgaaGCUgGCCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUAgcgCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 41562 0.72 0.194267
Target:  5'- cGUGGCGGCgauGCGAgcuuUCGCGCguaugcgCGCCGc -3'
miRNA:   3'- cCGCCGCCG---UGCU----AGCGCGa------GUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.