miRNA display CGI


Results 21 - 40 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 9556 0.71 0.209359
Target:  5'- cGGCGcucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 9603 0.72 0.189288
Target:  5'- uGCGGCaGCGCGAucaucgcgUCGCGC-CACgGAu -3'
miRNA:   3'- cCGCCGcCGUGCU--------AGCGCGaGUGgCU- -5'
24112 5' -60.4 NC_005263.2 + 9716 0.7 0.232411
Target:  5'- cGCuGCGGCGCGcUUGCGCUCguucGCCa- -3'
miRNA:   3'- cCGcCGCCGUGCuAGCGCGAG----UGGcu -5'
24112 5' -60.4 NC_005263.2 + 9733 0.71 0.226599
Target:  5'- cGGCcucgGGCGGCACGccuUCgagGCGCauuUCGCCGGu -3'
miRNA:   3'- -CCG----CCGCCGUGCu--AG---CGCG---AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9773 0.77 0.084315
Target:  5'- cGCcGCGuGCACGGUCGCGCgcgCAUCGAu -3'
miRNA:   3'- cCGcCGC-CGUGCUAGCGCGa--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9823 0.69 0.293322
Target:  5'- gGGCGuGCaucacguugacgaacGGCGCGG-CGCGCUUGCuCGAc -3'
miRNA:   3'- -CCGC-CG---------------CCGUGCUaGCGCGAGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 10156 0.67 0.367673
Target:  5'- cGCGGCaucGGC-CGGUUGCGC--ACCGGc -3'
miRNA:   3'- cCGCCG---CCGuGCUAGCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 10189 0.7 0.263375
Target:  5'- cGCGaGCaGGC-CGAa-GCGCUCGCCGGc -3'
miRNA:   3'- cCGC-CG-CCGuGCUagCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 10577 0.66 0.428583
Target:  5'- uGGcCGGCGGCccauugcuCGAUCugcauGCGCUuggcaagCGCCGGa -3'
miRNA:   3'- -CC-GCCGCCGu-------GCUAG-----CGCGA-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 10871 0.66 0.414838
Target:  5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcguaUCGCCGc -3'
miRNA:   3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 11533 0.72 0.191266
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 12116 0.67 0.384707
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
24112 5' -60.4 NC_005263.2 + 12118 0.67 0.393418
Target:  5'- -aCGGCcugaauGCACaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
24112 5' -60.4 NC_005263.2 + 12484 0.68 0.34311
Target:  5'- -cCGGCGGCGCGcAUUGCgGCauccugcgCGCCGGc -3'
miRNA:   3'- ccGCCGCCGUGC-UAGCG-CGa-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 12554 0.72 0.194267
Target:  5'- cGGcCGGCGGCGCcGUagcgcccgcccgCGCGC-CGCCGGg -3'
miRNA:   3'- -CC-GCCGCCGUGcUA------------GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 12729 0.69 0.304122
Target:  5'- aGGCGGCgcuaacuGGCACugcgacGUCuGCGCUCacgACCGAc -3'
miRNA:   3'- -CCGCCG-------CCGUGc-----UAG-CGCGAG---UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 13362 0.7 0.262724
Target:  5'- uGCgGGCGGCGCGAaacacgCGCcgcaauuGCUCGCCa- -3'
miRNA:   3'- cCG-CCGCCGUGCUa-----GCG-------CGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 13566 0.66 0.417565
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 14110 0.67 0.375274
Target:  5'- cGCGGCGGUcgccgucGCGAUCGUaGCcgCAgCGGc -3'
miRNA:   3'- cCGCCGCCG-------UGCUAGCG-CGa-GUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 14170 0.68 0.34311
Target:  5'- gGGcCGGCGGC-CGGUgUGCGCgagCugCGu -3'
miRNA:   3'- -CC-GCCGCCGuGCUA-GCGCGa--GugGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.