miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 5224 0.66 0.420304
Target:  5'- aGCGcGCGGCACGccAUUGaCGCgaucaggCGCCGu -3'
miRNA:   3'- cCGC-CGCCGUGC--UAGC-GCGa------GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 8395 0.66 0.420304
Target:  5'- cGCGGCccGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 24210 0.66 0.420304
Target:  5'- cGCgGGCGcGCucACGAgCGCGCUCACg-- -3'
miRNA:   3'- cCG-CCGC-CG--UGCUaGCGCGAGUGgcu -5'
24112 5' -60.4 NC_005263.2 + 13566 0.66 0.417565
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 10871 0.66 0.414838
Target:  5'- cGGCGGaacuCGGCACcggCGCGCgucgugagcggcguaUCGCCGc -3'
miRNA:   3'- -CCGCC----GCCGUGcuaGCGCG---------------AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 24833 0.66 0.411218
Target:  5'- cGGcCGGCGGCaacgGCGGUgccggUGCGCcaGCCGGc -3'
miRNA:   3'- -CC-GCCGCCG----UGCUA-----GCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 19395 0.66 0.411218
Target:  5'- cGGCGGCGcgcaGUACGGcaaCGCGCgCGuuGAg -3'
miRNA:   3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5'
24112 5' -60.4 NC_005263.2 + 2627 0.66 0.411218
Target:  5'- aGGCcGaCcGCGCGGuucaUCGCGCUUGCCGGc -3'
miRNA:   3'- -CCGcC-GcCGUGCU----AGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 38792 0.66 0.411218
Target:  5'- uGGaaGCGGcCACGAgcggcaUCGCugaGCUUGCCGAa -3'
miRNA:   3'- -CCgcCGCC-GUGCU------AGCG---CGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 35450 0.66 0.408516
Target:  5'- cGGCGcGcCGGCcgacgacgauaucgACGG-CGUGCUCACCu- -3'
miRNA:   3'- -CCGC-C-GCCG--------------UGCUaGCGCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 28310 0.67 0.402255
Target:  5'- cGCGaucGCGGCGCGAaucuggUCG-GC-CGCCGAg -3'
miRNA:   3'- cCGC---CGCCGUGCU------AGCgCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 30346 0.67 0.402255
Target:  5'- cGCGuGcCGaGCGCGGcCGCGCUgcCGCCGGc -3'
miRNA:   3'- cCGC-C-GC-CGUGCUaGCGCGA--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 25369 0.67 0.402255
Target:  5'- -uCGGCGGCcUGAUCgguGCGCUCaugcGCCGc -3'
miRNA:   3'- ccGCCGCCGuGCUAG---CGCGAG----UGGCu -5'
24112 5' -60.4 NC_005263.2 + 12118 0.67 0.393418
Target:  5'- -aCGGCcugaauGCACaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
24112 5' -60.4 NC_005263.2 + 20691 0.67 0.393418
Target:  5'- cGGCGGCGcgaaaccuGCGcCGGUCGUGaCgcaGCCGGu -3'
miRNA:   3'- -CCGCCGC--------CGU-GCUAGCGC-Gag-UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 26216 0.67 0.384707
Target:  5'- uGCGGCGGC-CGuUCGCGaa-ACCa- -3'
miRNA:   3'- cCGCCGCCGuGCuAGCGCgagUGGcu -5'
24112 5' -60.4 NC_005263.2 + 38498 0.67 0.384707
Target:  5'- cGUGGCGcGaCGCGAugaUCGCGCU-GCCGc -3'
miRNA:   3'- cCGCCGC-C-GUGCU---AGCGCGAgUGGCu -5'
24112 5' -60.4 NC_005263.2 + 12116 0.67 0.384707
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
24112 5' -60.4 NC_005263.2 + 31022 0.67 0.384707
Target:  5'- uGCGGCgaGGCGCGGcgUGCGCUgcUCGAg -3'
miRNA:   3'- cCGCCG--CCGUGCUa-GCGCGAguGGCU- -5'
24112 5' -60.4 NC_005263.2 + 33700 0.67 0.384707
Target:  5'- cGCGGCGGCAaua-CGCGCcagaCACCu- -3'
miRNA:   3'- cCGCCGCCGUgcuaGCGCGa---GUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.