miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 29070 0.67 0.383843
Target:  5'- cGCGGCccgcuacGGCGCGAUagGCGCgguUCAgCGAc -3'
miRNA:   3'- cCGCCG-------CCGUGCUAg-CGCG---AGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 9210 0.67 0.376125
Target:  5'- gGGCGGCGcucGUACGG-CGCGCgguacguguCCGAc -3'
miRNA:   3'- -CCGCCGC---CGUGCUaGCGCGagu------GGCU- -5'
24112 5' -60.4 NC_005263.2 + 14110 0.67 0.375274
Target:  5'- cGCGGCGGUcgccgucGCGAUCGUaGCcgCAgCGGc -3'
miRNA:   3'- cCGCCGCCG-------UGCUAGCG-CGa-GUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 10156 0.67 0.367673
Target:  5'- cGCGGCaucGGC-CGGUUGCGC--ACCGGc -3'
miRNA:   3'- cCGCCG---CCGuGCUAGCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 17588 0.67 0.367673
Target:  5'- cGGCGGCGGCcaaGG-CGCGCagggCAUCu- -3'
miRNA:   3'- -CCGCCGCCGug-CUaGCGCGa---GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 43302 0.67 0.367673
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 16431 0.67 0.367673
Target:  5'- cGGCGcUGGCGCGG-CGgGCcUCGCUGGc -3'
miRNA:   3'- -CCGCcGCCGUGCUaGCgCG-AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 19790 0.67 0.366835
Target:  5'- cGGCGGCcGaccagauucgcgcCGCGAUCGCGCaguuuCCGAa -3'
miRNA:   3'- -CCGCCGcC-------------GUGCUAGCGCGagu--GGCU- -5'
24112 5' -60.4 NC_005263.2 + 35749 0.67 0.359353
Target:  5'- aGCGuaGGCGCGggCGCGgUUACUGc -3'
miRNA:   3'- cCGCcgCCGUGCuaGCGCgAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 40068 0.67 0.359353
Target:  5'- cGCGGCGcCACGG-CGCGgaCGCCu- -3'
miRNA:   3'- cCGCCGCcGUGCUaGCGCgaGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 31481 0.67 0.359353
Target:  5'- cGGCGccuggcccgucaGCGGCGCGAgcugcugcUCGCGCgcgagC-CCGGc -3'
miRNA:   3'- -CCGC------------CGCCGUGCU--------AGCGCGa----GuGGCU- -5'
24112 5' -60.4 NC_005263.2 + 22005 0.68 0.351164
Target:  5'- aGCGGCGcGUACcaGGaCGCGCUCgGCCGc -3'
miRNA:   3'- cCGCCGC-CGUG--CUaGCGCGAG-UGGCu -5'
24112 5' -60.4 NC_005263.2 + 21780 0.68 0.351164
Target:  5'- -aCGaGUGGCGCGAaucacUCGCGCaUCGCCc- -3'
miRNA:   3'- ccGC-CGCCGUGCU-----AGCGCG-AGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 14470 0.68 0.351164
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGa -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14170 0.68 0.34311
Target:  5'- gGGcCGGCGGC-CGGUgUGCGCgagCugCGu -3'
miRNA:   3'- -CC-GCCGCCGuGCUA-GCGCGa--GugGCu -5'
24112 5' -60.4 NC_005263.2 + 12484 0.68 0.34311
Target:  5'- -cCGGCGGCGCGcAUUGCgGCauccugcgCGCCGGc -3'
miRNA:   3'- ccGCCGCCGUGC-UAGCG-CGa-------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 7375 0.68 0.34311
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9098 0.68 0.335189
Target:  5'- cGGCauaccCGGCugGAUCGUGUU-GCCGAa -3'
miRNA:   3'- -CCGcc---GCCGugCUAGCGCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 28954 0.68 0.335189
Target:  5'- cGGCGGauGCACGGUCacgacgacGCGCaagCGCCc- -3'
miRNA:   3'- -CCGCCgcCGUGCUAG--------CGCGa--GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 44385 0.68 0.335189
Target:  5'- cGGCccGGCGuGCGCGAg-GCGCUCAaucaaaccauUCGAa -3'
miRNA:   3'- -CCG--CCGC-CGUGCUagCGCGAGU----------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.