miRNA display CGI


Results 41 - 60 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 14266 0.69 0.276669
Target:  5'- cGGCGGcCGGCGCaa-CGCGCgCAUUGGg -3'
miRNA:   3'- -CCGCC-GCCGUGcuaGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14470 0.68 0.351164
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGa -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14563 0.66 0.45782
Target:  5'- -aCGGCGGCAUGuUUGCGUUUcagAUCGGc -3'
miRNA:   3'- ccGCCGCCGUGCuAGCGCGAG---UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14973 0.77 0.084315
Target:  5'- uGGCuGGCGGCAgCGAUCuGCGCgugacguucugcUCGCCGGc -3'
miRNA:   3'- -CCG-CCGCCGU-GCUAG-CGCG------------AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 15313 0.66 0.448271
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 15486 0.72 0.175019
Target:  5'- uGCGGCGGCGCGGUgaGCaucagCACCGGa -3'
miRNA:   3'- cCGCCGCCGUGCUAg-CGcga--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 16380 0.72 0.194267
Target:  5'- cGGCGGCGGCcUGAUgaaGCUgGCCGGc -3'
miRNA:   3'- -CCGCCGCCGuGCUAgcgCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 16431 0.67 0.367673
Target:  5'- cGGCGcUGGCGCGG-CGgGCcUCGCUGGc -3'
miRNA:   3'- -CCGCcGCCGUGCUaGCgCG-AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 16580 0.76 0.09948
Target:  5'- aGGcCGGCGGCGa---CGCGUUCGCCGGg -3'
miRNA:   3'- -CC-GCCGCCGUgcuaGCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 17521 0.7 0.232411
Target:  5'- aGGCGGCGGCuaucacggcaaACGGUgUGCGCgaauCCGGu -3'
miRNA:   3'- -CCGCCGCCG-----------UGCUA-GCGCGagu-GGCU- -5'
24112 5' -60.4 NC_005263.2 + 17588 0.67 0.367673
Target:  5'- cGGCGGCGGCcaaGG-CGCGCagggCAUCu- -3'
miRNA:   3'- -CCGCCGCCGug-CUaGCGCGa---GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 17756 0.77 0.073386
Target:  5'- cGGCGGCaGCGCGGcCGCGCUCGgCa- -3'
miRNA:   3'- -CCGCCGcCGUGCUaGCGCGAGUgGcu -5'
24112 5' -60.4 NC_005263.2 + 17831 0.77 0.079768
Target:  5'- cGCGcGCGGCcCGAUUGCGCagcgcuUCGCCGAc -3'
miRNA:   3'- cCGC-CGCCGuGCUAGCGCG------AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18524 0.68 0.312235
Target:  5'- cGGCGGCGucgacaccgcgaGCGCGuucaagaaguUCGCGCagcccggCACCGGu -3'
miRNA:   3'- -CCGCCGC------------CGUGCu---------AGCGCGa------GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18704 0.66 0.423972
Target:  5'- cGCGGCaGGCGCGGgcggCaacccuuuccuguaaGCGCgucggCGCCGGg -3'
miRNA:   3'- cCGCCG-CCGUGCUa---G---------------CGCGa----GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 18754 0.78 0.072169
Target:  5'- cGGCgcgaucguaGGCGGCGCGGugcucgcgcugguuaUCGUGCUCGCCGc -3'
miRNA:   3'- -CCG---------CCGCCGUGCU---------------AGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 18932 0.68 0.319751
Target:  5'- cGC-GCGGCACGA--GCGCUCgagcgcGCCGGu -3'
miRNA:   3'- cCGcCGCCGUGCUagCGCGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 19395 0.66 0.411218
Target:  5'- cGGCGGCGcgcaGUACGGcaaCGCGCgCGuuGAg -3'
miRNA:   3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5'
24112 5' -60.4 NC_005263.2 + 19790 0.67 0.366835
Target:  5'- cGGCGGCcGaccagauucgcgcCGCGAUCGCGCaguuuCCGAa -3'
miRNA:   3'- -CCGCCGcC-------------GUGCUAGCGCGagu--GGCU- -5'
24112 5' -60.4 NC_005263.2 + 19872 0.66 0.42951
Target:  5'- -aCGGCGaGCGCGGcgaGCGCg-GCCGAu -3'
miRNA:   3'- ccGCCGC-CGUGCUag-CGCGagUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.