miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 29233 0.67 0.325057
Target:  5'- -gUCGGCgCGCaGCGGCGCG-CCGaGGCa -3'
miRNA:   3'- aaGGCUG-GCG-CGUCGCGUaGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 2354 0.67 0.297897
Target:  5'- cUUCCGccagcgcagGCCGUGCcaacccucagcaccgAGCgGCAggCCGGGGCa -3'
miRNA:   3'- -AAGGC---------UGGCGCG---------------UCG-CGUa-GGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 17492 0.67 0.29499
Target:  5'- -cCUGAUCGCGCgcGGCGCGUCgaucgaucaggCGGcGGCu -3'
miRNA:   3'- aaGGCUGGCGCG--UCGCGUAG-----------GUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 29457 0.67 0.28782
Target:  5'- aUUCG-CCG-GCAGCGUAccgCCAGcGGCg -3'
miRNA:   3'- aAGGCuGGCgCGUCGCGUa--GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 13287 0.67 0.28782
Target:  5'- -aCCGACUgGCGCGuGCGCAgCCAGuugucgauguacGGCa -3'
miRNA:   3'- aaGGCUGG-CGCGU-CGCGUaGGUC------------CCG- -5'
24114 5' -61.1 NC_005263.2 + 32465 0.67 0.28782
Target:  5'- --aCGAUCGCGUagaucggcgucGGCGCAUUCAGcgacGGCa -3'
miRNA:   3'- aagGCUGGCGCG-----------UCGCGUAGGUC----CCG- -5'
24114 5' -61.1 NC_005263.2 + 12834 0.67 0.305261
Target:  5'- gUCCaGuuCGCGCAGCGCAUuCCacugccacuugaucgAGGGg -3'
miRNA:   3'- aAGG-CugGCGCGUCGCGUA-GG---------------UCCCg -5'
24114 5' -61.1 NC_005263.2 + 18679 0.67 0.317332
Target:  5'- aUCCGuuCGCGCAGCaag-CUAGcGGCg -3'
miRNA:   3'- aAGGCugGCGCGUCGcguaGGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 24808 0.68 0.267133
Target:  5'- -cCUGGCCGCcguaaaaCGGCGCcuguccCCAGGGCu -3'
miRNA:   3'- aaGGCUGGCGc------GUCGCGua----GGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 535 0.68 0.26051
Target:  5'- gUUCGACuCGaCGUAGCcuuGCAcgUUCAGGGCg -3'
miRNA:   3'- aAGGCUG-GC-GCGUCG---CGU--AGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 45719 0.68 0.267133
Target:  5'- --gCGACCGC-CGGCGCcgUCAuGGGUu -3'
miRNA:   3'- aagGCUGGCGcGUCGCGuaGGU-CCCG- -5'
24114 5' -61.1 NC_005263.2 + 25982 0.68 0.267133
Target:  5'- gUCCGGCgauCGCGCuuGCaGCGUgCCGGcGGCa -3'
miRNA:   3'- aAGGCUG---GCGCGu-CG-CGUA-GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 46818 0.68 0.266465
Target:  5'- -gCCGAUCGCGUAacgcaacGCGCG-CCAGGcgGCg -3'
miRNA:   3'- aaGGCUGGCGCGU-------CGCGUaGGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 24092 0.68 0.247665
Target:  5'- aUCCGGCCG-GCGGCGgCuacgugCC-GGGCu -3'
miRNA:   3'- aAGGCUGGCgCGUCGC-Gua----GGuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 10398 0.68 0.247665
Target:  5'- -gCCGGCCG-GCgAGCGgGUCCGGcGCg -3'
miRNA:   3'- aaGGCUGGCgCG-UCGCgUAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 35528 0.68 0.280787
Target:  5'- -gCCGACUGCGCccggcGGCGCG-CgGgcGGGCg -3'
miRNA:   3'- aaGGCUGGCGCG-----UCGCGUaGgU--CCCG- -5'
24114 5' -61.1 NC_005263.2 + 30357 0.68 0.267133
Target:  5'- -gCCGAucaggucgUCGUGCAGCGC-UUCGGGGa -3'
miRNA:   3'- aaGGCU--------GGCGCGUCGCGuAGGUCCCg -5'
24114 5' -61.1 NC_005263.2 + 9546 0.68 0.247665
Target:  5'- --gCGACCGaCGCGGCGCucgcggcuugCCAGGcgGCg -3'
miRNA:   3'- aagGCUGGC-GCGUCGCGua--------GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 22416 0.69 0.21226
Target:  5'- -gCCG-CCGUGCucgcCGUGUCCGGGGUg -3'
miRNA:   3'- aaGGCuGGCGCGuc--GCGUAGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 33998 0.69 0.223551
Target:  5'- -gCCGGCCGUguuggcugcgucGCGGCGCGcgaUCCAGaGCu -3'
miRNA:   3'- aaGGCUGGCG------------CGUCGCGU---AGGUCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.