miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 28787 0.67 0.29499
Target:  5'- cUCCuGGuuGCcuuGCGCAUCCGGGcGCg -3'
miRNA:   3'- aAGG-CUggCGcguCGCGUAGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 13949 0.66 0.332129
Target:  5'- -gUCGAgCGCauaggacGCGGCGCGcguUCgCGGGGCg -3'
miRNA:   3'- aaGGCUgGCG-------CGUCGCGU---AG-GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 32465 0.67 0.28782
Target:  5'- --aCGAUCGCGUagaucggcgucGGCGCAUUCAGcgacGGCa -3'
miRNA:   3'- aagGCUGGCGCG-----------UCGCGUAGGUC----CCG- -5'
24114 5' -61.1 NC_005263.2 + 33998 0.69 0.223551
Target:  5'- -gCCGGCCGUguuggcugcgucGCGGCGCGcgaUCCAGaGCu -3'
miRNA:   3'- aaGGCUGGCG------------CGUCGCGU---AGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 13727 0.67 0.325057
Target:  5'- gUCCGACgUGCucGCGGCGUuaccgCCGGcGGCc -3'
miRNA:   3'- aAGGCUG-GCG--CGUCGCGua---GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 12834 0.67 0.305261
Target:  5'- gUCCaGuuCGCGCAGCGCAUuCCacugccacuugaucgAGGGg -3'
miRNA:   3'- aAGG-CugGCGCGUCGCGUA-GG---------------UCCCg -5'
24114 5' -61.1 NC_005263.2 + 19051 0.66 0.340924
Target:  5'- -gCgGGCCGCGUcGUGCuAUCCAaGGCc -3'
miRNA:   3'- aaGgCUGGCGCGuCGCG-UAGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 14376 0.66 0.374311
Target:  5'- -cCCGauGCCGgGCcGCuCGUCCGGGuGCg -3'
miRNA:   3'- aaGGC--UGGCgCGuCGcGUAGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 7511 0.7 0.2068
Target:  5'- -gCUGACgGCGaGGUGCGUaCAGGGCg -3'
miRNA:   3'- aaGGCUGgCGCgUCGCGUAgGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 17518 0.7 0.201462
Target:  5'- aUCUGAUCGCGCuguacAGCGCG-CgCAGcGGCg -3'
miRNA:   3'- aAGGCUGGCGCG-----UCGCGUaG-GUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 9546 0.68 0.247665
Target:  5'- --gCGACCGaCGCGGCGCucgcggcuugCCAGGcgGCg -3'
miRNA:   3'- aagGCUGGC-GCGUCGCGua--------GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 535 0.68 0.26051
Target:  5'- gUUCGACuCGaCGUAGCcuuGCAcgUUCAGGGCg -3'
miRNA:   3'- aAGGCUG-GC-GCGUCG---CGU--AGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 30612 0.69 0.241441
Target:  5'- -aUCGAUCGaCGCGccgcGCGCGaUCAGGGCg -3'
miRNA:   3'- aaGGCUGGC-GCGU----CGCGUaGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 21454 0.66 0.349065
Target:  5'- aUCCGgaagcgccACCGCuGCGGCGCcacuggcaaAUCCGGcGCa -3'
miRNA:   3'- aAGGC--------UGGCG-CGUCGCG---------UAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 10701 0.79 0.040931
Target:  5'- --aCGGCCGCGCGacgcgaugcacgucGCGCAgCCAGGGCg -3'
miRNA:   3'- aagGCUGGCGCGU--------------CGCGUaGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 31246 0.76 0.073065
Target:  5'- cUUCGGuuCCGCGCGGCGCGgcgCC-GGGCa -3'
miRNA:   3'- aAGGCU--GGCGCGUCGCGUa--GGuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 3448 0.71 0.154398
Target:  5'- cUUCGGCgCGCGCGaCGCAUCgAGGcGCa -3'
miRNA:   3'- aAGGCUG-GCGCGUcGCGUAGgUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 9704 0.7 0.185671
Target:  5'- -cCCGACgCGCGaCAGUGCGUCgAucaguucggccucGGGCg -3'
miRNA:   3'- aaGGCUG-GCGC-GUCGCGUAGgU-------------CCCG- -5'
24114 5' -61.1 NC_005263.2 + 35528 0.68 0.280787
Target:  5'- -gCCGACUGCGCccggcGGCGCG-CgGgcGGGCg -3'
miRNA:   3'- aaGGCUGGCGCG-----UCGCGUaGgU--CCCG- -5'
24114 5' -61.1 NC_005263.2 + 45719 0.68 0.267133
Target:  5'- --gCGACCGC-CGGCGCcgUCAuGGGUu -3'
miRNA:   3'- aagGCUGGCGcGUCGCGuaGGU-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.