miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 29054 0.86 0.011509
Target:  5'- ---aGGCCGCGCGGCGCGUCCucGGGGCg -3'
miRNA:   3'- aaggCUGGCGCGUCGCGUAGG--UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 25982 0.68 0.267133
Target:  5'- gUCCGGCgauCGCGCuuGCaGCGUgCCGGcGGCa -3'
miRNA:   3'- aAGGCUG---GCGCGu-CG-CGUA-GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 32465 0.67 0.28782
Target:  5'- --aCGAUCGCGUagaucggcgucGGCGCAUUCAGcgacGGCa -3'
miRNA:   3'- aagGCUGGCGCG-----------UCGCGUAGGUC----CCG- -5'
24114 5' -61.1 NC_005263.2 + 12556 0.65 0.380377
Target:  5'- -gCCGGCgGCGCcguagcgcccgcccGcGCGCcgCCGGGcGCa -3'
miRNA:   3'- aaGGCUGgCGCG--------------U-CGCGuaGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 30286 0.72 0.138528
Target:  5'- aUCgGGCCGCGC-GCgGCAUCCucGGCc -3'
miRNA:   3'- aAGgCUGGCGCGuCG-CGUAGGucCCG- -5'
24114 5' -61.1 NC_005263.2 + 21244 0.71 0.154398
Target:  5'- -aCCGgcgacgaaguaGCCGCGCAGUGCugcUCUugGGGGCu -3'
miRNA:   3'- aaGGC-----------UGGCGCGUCGCGu--AGG--UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 9752 0.7 0.190641
Target:  5'- -gUCGAUCGCGguGCGCAccgacuucgcaUCCaucgcaccgaacgGGGGCg -3'
miRNA:   3'- aaGGCUGGCGCguCGCGU-----------AGG-------------UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 44764 0.7 0.191145
Target:  5'- -cUCGACCGCGC-GCgGCG-CCGGcGGCg -3'
miRNA:   3'- aaGGCUGGCGCGuCG-CGUaGGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 7511 0.7 0.2068
Target:  5'- -gCUGACgGCGaGGUGCGUaCAGGGCg -3'
miRNA:   3'- aaGGCUGgCGCgUCGCGUAgGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 24808 0.68 0.267133
Target:  5'- -cCUGGCCGCcguaaaaCGGCGCcuguccCCAGGGCu -3'
miRNA:   3'- aaGGCUGGCGc------GUCGCGua----GGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 30612 0.69 0.241441
Target:  5'- -aUCGAUCGaCGCGccgcGCGCGaUCAGGGCg -3'
miRNA:   3'- aaGGCUGGC-GCGU----CGCGUaGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 17518 0.7 0.201462
Target:  5'- aUCUGAUCGCGCuguacAGCGCG-CgCAGcGGCg -3'
miRNA:   3'- aAGGCUGGCGCG-----UCGCGUaG-GUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 19117 0.79 0.041285
Target:  5'- -gUCGGCCGCGCcgAGCGCAUCgCcGGGCg -3'
miRNA:   3'- aaGGCUGGCGCG--UCGCGUAG-GuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 9546 0.68 0.247665
Target:  5'- --gCGACCGaCGCGGCGCucgcggcuugCCAGGcgGCg -3'
miRNA:   3'- aagGCUGGC-GCGUCGCGua--------GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 45851 0.73 0.108162
Target:  5'- -gCCGAgCGCGCGGCGCG-CUAcGGCa -3'
miRNA:   3'- aaGGCUgGCGCGUCGCGUaGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 21409 0.7 0.196244
Target:  5'- -gCCGGCCugcucgGCGCAuuacguGCGCAUCaauGGGCg -3'
miRNA:   3'- aaGGCUGG------CGCGU------CGCGUAGgu-CCCG- -5'
24114 5' -61.1 NC_005263.2 + 535 0.68 0.26051
Target:  5'- gUUCGACuCGaCGUAGCcuuGCAcgUUCAGGGCg -3'
miRNA:   3'- aAGGCUG-GC-GCGUCG---CGU--AGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 13287 0.67 0.28782
Target:  5'- -aCCGACUgGCGCGuGCGCAgCCAGuugucgauguacGGCa -3'
miRNA:   3'- aaGGCUGG-CGCGU-CGCGUaGGUC------------CCG- -5'
24114 5' -61.1 NC_005263.2 + 31623 0.73 0.117518
Target:  5'- --aCGGCCGCGCGGCGCAgcgCCGucucGGUg -3'
miRNA:   3'- aagGCUGGCGCGUCGCGUa--GGUc---CCG- -5'
24114 5' -61.1 NC_005263.2 + 2629 0.71 0.160331
Target:  5'- -gCCGACCGCGCGGUucaucgcgcuugccgGCGUaUCGGcGGCg -3'
miRNA:   3'- aaGGCUGGCGCGUCG---------------CGUA-GGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.