miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 535 0.68 0.26051
Target:  5'- gUUCGACuCGaCGUAGCcuuGCAcgUUCAGGGCg -3'
miRNA:   3'- aAGGCUG-GC-GCGUCG---CGU--AGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 2354 0.67 0.297897
Target:  5'- cUUCCGccagcgcagGCCGUGCcaacccucagcaccgAGCgGCAggCCGGGGCa -3'
miRNA:   3'- -AAGGC---------UGGCGCG---------------UCG-CGUa-GGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 2629 0.71 0.160331
Target:  5'- -gCCGACCGCGCGGUucaucgcgcuugccgGCGUaUCGGcGGCg -3'
miRNA:   3'- aaGGCUGGCGCGUCG---------------CGUA-GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 2690 0.66 0.332921
Target:  5'- -gCUGAUCGCGCGGCcGCucggCAGGuGCa -3'
miRNA:   3'- aaGGCUGGCGCGUCG-CGuag-GUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 2797 0.67 0.302299
Target:  5'- --gCGAUUGCGCAGCGCGUCauacGCg -3'
miRNA:   3'- aagGCUGGCGCGUCGCGUAGguccCG- -5'
24114 5' -61.1 NC_005263.2 + 3448 0.71 0.154398
Target:  5'- cUUCGGCgCGCGCGaCGCAUCgAGGcGCa -3'
miRNA:   3'- aAGGCUG-GCGCGUcGCGUAGgUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 3557 0.66 0.357344
Target:  5'- ----uGCCGCGCAGCGCGUC---GGCc -3'
miRNA:   3'- aaggcUGGCGCGUCGCGUAGgucCCG- -5'
24114 5' -61.1 NC_005263.2 + 7511 0.7 0.2068
Target:  5'- -gCUGACgGCGaGGUGCGUaCAGGGCg -3'
miRNA:   3'- aaGGCUGgCGCgUCGCGUAgGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 7700 0.66 0.340924
Target:  5'- -gUCGGCCGCGCGGCGUGUgCAccGUu -3'
miRNA:   3'- aaGGCUGGCGCGUCGCGUAgGUccCG- -5'
24114 5' -61.1 NC_005263.2 + 9546 0.68 0.247665
Target:  5'- --gCGACCGaCGCGGCGCucgcggcuugCCAGGcgGCg -3'
miRNA:   3'- aagGCUGGC-GCGUCGCGua--------GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 9704 0.7 0.185671
Target:  5'- -cCCGACgCGCGaCAGUGCGUCgAucaguucggccucGGGCg -3'
miRNA:   3'- aaGGCUG-GCGC-GUCGCGUAGgU-------------CCCG- -5'
24114 5' -61.1 NC_005263.2 + 9752 0.7 0.190641
Target:  5'- -gUCGAUCGCGguGCGCAccgacuucgcaUCCaucgcaccgaacgGGGGCg -3'
miRNA:   3'- aaGGCUGGCGCguCGCGU-----------AGG-------------UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 10398 0.68 0.247665
Target:  5'- -gCCGGCCG-GCgAGCGgGUCCGGcGCg -3'
miRNA:   3'- aaGGCUGGCgCG-UCGCgUAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 10701 0.79 0.040931
Target:  5'- --aCGGCCGCGCGacgcgaugcacgucGCGCAgCCAGGGCg -3'
miRNA:   3'- aagGCUGGCGCGU--------------CGCGUaGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 12214 0.66 0.374311
Target:  5'- gUCuCGACCGCaccgacaucaacGCGGCgaaGUAUuuGGGGCu -3'
miRNA:   3'- aAG-GCUGGCG------------CGUCG---CGUAggUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 12556 0.65 0.380377
Target:  5'- -gCCGGCgGCGCcguagcgcccgcccGcGCGCcgCCGGGcGCa -3'
miRNA:   3'- aaGGCUGgCGCG--------------U-CGCGuaGGUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 12834 0.67 0.305261
Target:  5'- gUCCaGuuCGCGCAGCGCAUuCCacugccacuugaucgAGGGg -3'
miRNA:   3'- aAGG-CugGCGCGUCGCGUA-GG---------------UCCCg -5'
24114 5' -61.1 NC_005263.2 + 13287 0.67 0.28782
Target:  5'- -aCCGACUgGCGCGuGCGCAgCCAGuugucgauguacGGCa -3'
miRNA:   3'- aaGGCUGG-CGCGU-CGCGUaGGUC------------CCG- -5'
24114 5' -61.1 NC_005263.2 + 13727 0.67 0.325057
Target:  5'- gUCCGACgUGCucGCGGCGUuaccgCCGGcGGCc -3'
miRNA:   3'- aAGGCUG-GCG--CGUCGCGua---GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 13949 0.66 0.332129
Target:  5'- -gUCGAgCGCauaggacGCGGCGCGcguUCgCGGGGCg -3'
miRNA:   3'- aaGGCUgGCG-------CGUCGCGU---AG-GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.