miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 46453 1.08 0.000226
Target:  5'- uUUCCGACCGCGCAGCGCAUCCAGGGCu -3'
miRNA:   3'- -AAGGCUGGCGCGUCGCGUAGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 29054 0.86 0.011509
Target:  5'- ---aGGCCGCGCGGCGCGUCCucGGGGCg -3'
miRNA:   3'- aaggCUGGCGCGUCGCGUAGG--UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 10701 0.79 0.040931
Target:  5'- --aCGGCCGCGCGacgcgaugcacgucGCGCAgCCAGGGCg -3'
miRNA:   3'- aagGCUGGCGCGU--------------CGCGUaGGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 19117 0.79 0.041285
Target:  5'- -gUCGGCCGCGCcgAGCGCAUCgCcGGGCg -3'
miRNA:   3'- aaGGCUGGCGCG--UCGCGUAG-GuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 31246 0.76 0.073065
Target:  5'- cUUCGGuuCCGCGCGGCGCGgcgCC-GGGCa -3'
miRNA:   3'- aAGGCU--GGCGCGUCGCGUa--GGuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 45851 0.73 0.108162
Target:  5'- -gCCGAgCGCGCGGCGCG-CUAcGGCa -3'
miRNA:   3'- aaGGCUgGCGCGUCGCGUaGGUcCCG- -5'
24114 5' -61.1 NC_005263.2 + 31623 0.73 0.117518
Target:  5'- --aCGGCCGCGCGGCGCAgcgCCGucucGGUg -3'
miRNA:   3'- aagGCUGGCGCGUCGCGUa--GGUc---CCG- -5'
24114 5' -61.1 NC_005263.2 + 30286 0.72 0.138528
Target:  5'- aUCgGGCCGCGC-GCgGCAUCCucGGCc -3'
miRNA:   3'- aAGgCUGGCGCGuCG-CGUAGGucCCG- -5'
24114 5' -61.1 NC_005263.2 + 21244 0.71 0.154398
Target:  5'- -aCCGgcgacgaaguaGCCGCGCAGUGCugcUCUugGGGGCu -3'
miRNA:   3'- aaGGC-----------UGGCGCGUCGCGu--AGG--UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 3448 0.71 0.154398
Target:  5'- cUUCGGCgCGCGCGaCGCAUCgAGGcGCa -3'
miRNA:   3'- aAGGCUG-GCGCGUcGCGUAGgUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 2629 0.71 0.160331
Target:  5'- -gCCGACCGCGCGGUucaucgcgcuugccgGCGUaUCGGcGGCg -3'
miRNA:   3'- aaGGCUGGCGCGUCG---------------CGUA-GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 9704 0.7 0.185671
Target:  5'- -cCCGACgCGCGaCAGUGCGUCgAucaguucggccucGGGCg -3'
miRNA:   3'- aaGGCUG-GCGC-GUCGCGUAGgU-------------CCCG- -5'
24114 5' -61.1 NC_005263.2 + 9752 0.7 0.190641
Target:  5'- -gUCGAUCGCGguGCGCAccgacuucgcaUCCaucgcaccgaacgGGGGCg -3'
miRNA:   3'- aaGGCUGGCGCguCGCGU-----------AGG-------------UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 44764 0.7 0.191145
Target:  5'- -cUCGACCGCGC-GCgGCG-CCGGcGGCg -3'
miRNA:   3'- aaGGCUGGCGCGuCG-CGUaGGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 21409 0.7 0.196244
Target:  5'- -gCCGGCCugcucgGCGCAuuacguGCGCAUCaauGGGCg -3'
miRNA:   3'- aaGGCUGG------CGCGU------CGCGUAGgu-CCCG- -5'
24114 5' -61.1 NC_005263.2 + 17518 0.7 0.201462
Target:  5'- aUCUGAUCGCGCuguacAGCGCG-CgCAGcGGCg -3'
miRNA:   3'- aAGGCUGGCGCG-----UCGCGUaG-GUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 17593 0.7 0.2068
Target:  5'- --gCGGCCaaggcGCGCAGgGCAucuUCCAGuGGCg -3'
miRNA:   3'- aagGCUGG-----CGCGUCgCGU---AGGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 7511 0.7 0.2068
Target:  5'- -gCUGACgGCGaGGUGCGUaCAGGGCg -3'
miRNA:   3'- aaGGCUGgCGCgUCGCGUAgGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 47231 0.7 0.208969
Target:  5'- aUUCCGAUCGCcaaCGGCGuCGUCagcgugccuauggcaCAGGGCa -3'
miRNA:   3'- -AAGGCUGGCGc--GUCGC-GUAG---------------GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 22416 0.69 0.21226
Target:  5'- -gCCG-CCGUGCucgcCGUGUCCGGGGUg -3'
miRNA:   3'- aaGGCuGGCGCGuc--GCGUAGGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.