miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 5' -61.1 NC_005263.2 + 19054 0.69 0.232948
Target:  5'- -cCCGaggacgcGCCGCGCGGCcugcgcgcgcugguGCGUCuugCAGGGCu -3'
miRNA:   3'- aaGGC-------UGGCGCGUCG--------------CGUAG---GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 29457 0.67 0.28782
Target:  5'- aUUCG-CCG-GCAGCGUAccgCCAGcGGCg -3'
miRNA:   3'- aAGGCuGGCgCGUCGCGUa--GGUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 35528 0.68 0.280787
Target:  5'- -gCCGACUGCGCccggcGGCGCG-CgGgcGGGCg -3'
miRNA:   3'- aaGGCUGGCGCG-----UCGCGUaGgU--CCCG- -5'
24114 5' -61.1 NC_005263.2 + 45719 0.68 0.267133
Target:  5'- --gCGACCGC-CGGCGCcgUCAuGGGUu -3'
miRNA:   3'- aagGCUGGCGcGUCGCGuaGGU-CCCG- -5'
24114 5' -61.1 NC_005263.2 + 30357 0.68 0.267133
Target:  5'- -gCCGAucaggucgUCGUGCAGCGC-UUCGGGGa -3'
miRNA:   3'- aaGGCU--------GGCGCGUCGCGuAGGUCCCg -5'
24114 5' -61.1 NC_005263.2 + 46818 0.68 0.266465
Target:  5'- -gCCGAUCGCGUAacgcaacGCGCG-CCAGGcgGCg -3'
miRNA:   3'- aaGGCUGGCGCGU-------CGCGUaGGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 24092 0.68 0.247665
Target:  5'- aUCCGGCCG-GCGGCGgCuacgugCC-GGGCu -3'
miRNA:   3'- aAGGCUGGCgCGUCGC-Gua----GGuCCCG- -5'
24114 5' -61.1 NC_005263.2 + 10398 0.68 0.247665
Target:  5'- -gCCGGCCG-GCgAGCGgGUCCGGcGCg -3'
miRNA:   3'- aaGGCUGGCgCG-UCGCgUAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 17371 0.69 0.240826
Target:  5'- aUCCGaACCGCGUgaagcugucugccGGCGCggCCGcgcgccuggcGGGCg -3'
miRNA:   3'- aAGGC-UGGCGCG-------------UCGCGuaGGU----------CCCG- -5'
24114 5' -61.1 NC_005263.2 + 17492 0.67 0.29499
Target:  5'- -cCUGAUCGCGCgcGGCGCGUCgaucgaucaggCGGcGGCu -3'
miRNA:   3'- aaGGCUGGCGCG--UCGCGUAG-----------GUC-CCG- -5'
24114 5' -61.1 NC_005263.2 + 2354 0.67 0.297897
Target:  5'- cUUCCGccagcgcagGCCGUGCcaacccucagcaccgAGCgGCAggCCGGGGCa -3'
miRNA:   3'- -AAGGC---------UGGCGCG---------------UCG-CGUa-GGUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 2690 0.66 0.332921
Target:  5'- -gCUGAUCGCGCGGCcGCucggCAGGuGCa -3'
miRNA:   3'- aaGGCUGGCGCGUCG-CGuag-GUCC-CG- -5'
24114 5' -61.1 NC_005263.2 + 12214 0.66 0.374311
Target:  5'- gUCuCGACCGCaccgacaucaacGCGGCgaaGUAUuuGGGGCu -3'
miRNA:   3'- aAG-GCUGGCG------------CGUCG---CGUAggUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 15252 0.66 0.371731
Target:  5'- gUCCGGCUacaugcugcggcuuGuCGCGGCGCuga-AGGGCg -3'
miRNA:   3'- aAGGCUGG--------------C-GCGUCGCGuaggUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 22119 0.66 0.36576
Target:  5'- -gCCGGCaCGCuGCaAGCGCGaucgCCggacGGGGCg -3'
miRNA:   3'- aaGGCUG-GCG-CG-UCGCGUa---GG----UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 38133 0.66 0.36576
Target:  5'- -aCCgGACgGCGU-GCGCAgccCgCAGGGCa -3'
miRNA:   3'- aaGG-CUGgCGCGuCGCGUa--G-GUCCCG- -5'
24114 5' -61.1 NC_005263.2 + 21987 0.66 0.357344
Target:  5'- -gUCGAcCCGCugacuucgaGCGGCGCGUaCCAGGacGCg -3'
miRNA:   3'- aaGGCU-GGCG---------CGUCGCGUA-GGUCC--CG- -5'
24114 5' -61.1 NC_005263.2 + 21454 0.66 0.349065
Target:  5'- aUCCGgaagcgccACCGCuGCGGCGCcacuggcaaAUCCGGcGCa -3'
miRNA:   3'- aAGGC--------UGGCG-CGUCGCG---------UAGGUCcCG- -5'
24114 5' -61.1 NC_005263.2 + 17711 0.66 0.340924
Target:  5'- gUCCGAucCCGaCG-AGCGCcgCCgcauGGGGCu -3'
miRNA:   3'- aAGGCU--GGC-GCgUCGCGuaGG----UCCCG- -5'
24114 5' -61.1 NC_005263.2 + 7700 0.66 0.340924
Target:  5'- -gUCGGCCGCGCGGCGUGUgCAccGUu -3'
miRNA:   3'- aaGGCUGGCGCGUCGCGUAgGUccCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.