miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 17575 0.68 0.513695
Target:  5'- aGCaGCGCauCGAGCUGCuCGCGCagcgGGGUc -3'
miRNA:   3'- -CGaUGUGgcGCUUGAUG-GCGCG----CCCG- -5'
24115 5' -56.8 NC_005263.2 + 17751 0.69 0.46292
Target:  5'- --gGCGCCgGCGGcaGCgcgGCCGCGCucGGCa -3'
miRNA:   3'- cgaUGUGG-CGCU--UGa--UGGCGCGc-CCG- -5'
24115 5' -56.8 NC_005263.2 + 17853 0.69 0.424263
Target:  5'- cGCUuCGCCGaCG-ACUACCGCGCa--- -3'
miRNA:   3'- -CGAuGUGGC-GCuUGAUGGCGCGcccg -5'
24115 5' -56.8 NC_005263.2 + 17877 0.76 0.168371
Target:  5'- cGCUuCGCCGCGAACgaucagucgACCG-GCGGcGCg -3'
miRNA:   3'- -CGAuGUGGCGCUUGa--------UGGCgCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 17894 0.66 0.614255
Target:  5'- uGCU-UACCGUGAACgg-CGCGCagaucggcgcgccccGGGCu -3'
miRNA:   3'- -CGAuGUGGCGCUUGaugGCGCG---------------CCCG- -5'
24115 5' -56.8 NC_005263.2 + 18136 0.67 0.566601
Target:  5'- cGCUgaucGCGCUGCccGCcGCUGCGCaGGCc -3'
miRNA:   3'- -CGA----UGUGGCGcuUGaUGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 18414 0.66 0.630606
Target:  5'- uGCUACGCCGUcuGCUucgucggcgaugaACCGCuCGaGGUg -3'
miRNA:   3'- -CGAUGUGGCGcuUGA-------------UGGCGcGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 18528 0.69 0.466888
Target:  5'- gGCgucgACACCGCGAGCgcguucaagaaguUCGCGCagcccGGCa -3'
miRNA:   3'- -CGa---UGUGGCGCUUGau-----------GGCGCGc----CCG- -5'
24115 5' -56.8 NC_005263.2 + 18593 0.71 0.353086
Target:  5'- uGCUggcGCGCCGaCGGAC-GCCGCaGCGGcGUu -3'
miRNA:   3'- -CGA---UGUGGC-GCUUGaUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 18907 0.69 0.424263
Target:  5'- --cGCGCCGgccugcguCGAGCgugACCGCGCGG-Ca -3'
miRNA:   3'- cgaUGUGGC--------GCUUGa--UGGCGCGCCcG- -5'
24115 5' -56.8 NC_005263.2 + 19025 0.72 0.313084
Target:  5'- cGCUGaACCGCGc-CUAUCGCgccguaGCGGGCc -3'
miRNA:   3'- -CGAUgUGGCGCuuGAUGGCG------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 19044 0.7 0.378767
Target:  5'- uGC-GCGCCGCcccgaGGACgcGCCGCGCGGccuGCg -3'
miRNA:   3'- -CGaUGUGGCG-----CUUGa-UGGCGCGCC---CG- -5'
24115 5' -56.8 NC_005263.2 + 19670 0.69 0.46292
Target:  5'- cCUACGCCGC--GCUGCCcgcgacguucacGCGCGugccGGCg -3'
miRNA:   3'- cGAUGUGGCGcuUGAUGG------------CGCGC----CCG- -5'
24115 5' -56.8 NC_005263.2 + 19751 0.72 0.276613
Target:  5'- cGCUggcGCGCUgGCGGcGCUcgugGCCGUGUGGGCa -3'
miRNA:   3'- -CGA---UGUGG-CGCU-UGA----UGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 19874 0.69 0.46292
Target:  5'- gGCgaGCGCgGCGAGCgcgGCCGaUGCaGGCc -3'
miRNA:   3'- -CGa-UGUGgCGCUUGa--UGGC-GCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 19957 0.66 0.631696
Target:  5'- -aUGCGCuCGCGuGCU-CgGCGCuGGCa -3'
miRNA:   3'- cgAUGUG-GCGCuUGAuGgCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 20308 0.71 0.353086
Target:  5'- cGCgaucACgACgGCGAugUACCGCGCGaagcauGGCc -3'
miRNA:   3'- -CGa---UG-UGgCGCUugAUGGCGCGC------CCG- -5'
24115 5' -56.8 NC_005263.2 + 21169 0.82 0.058018
Target:  5'- gGCUACGCCacggggccggacGCGGACgcgcGCgGCGCGGGCg -3'
miRNA:   3'- -CGAUGUGG------------CGCUUGa---UGgCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 21584 0.67 0.528326
Target:  5'- uGCU-CGCCGCcGGCgucgacGCCGCGCGcaacaguuacaucaaGGCg -3'
miRNA:   3'- -CGAuGUGGCGcUUGa-----UGGCGCGC---------------CCG- -5'
24115 5' -56.8 NC_005263.2 + 21812 0.67 0.545232
Target:  5'- aGCUG-GCCgGCGAGCaaGCCauucuCGCGGGCg -3'
miRNA:   3'- -CGAUgUGG-CGCUUGa-UGGc----GCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.