miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 9785 0.68 0.493089
Target:  5'- --cGCACCGaacggGGGCgccucGCCGCGUGcGGCa -3'
miRNA:   3'- cgaUGUGGCg----CUUGa----UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 10261 0.66 0.609899
Target:  5'- cGC-ACGCgguuCGCGAAacGCCGCGUcGGCg -3'
miRNA:   3'- -CGaUGUG----GCGCUUgaUGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 10660 0.7 0.39657
Target:  5'- --gACGCCGCGcag-ACCGCGCGcGCc -3'
miRNA:   3'- cgaUGUGGCGCuugaUGGCGCGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 10843 0.66 0.631696
Target:  5'- uGCUucguUGgUGCGGGCUACgGCGuCGcGGCg -3'
miRNA:   3'- -CGAu---GUgGCGCUUGAUGgCGC-GC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 11094 0.68 0.481919
Target:  5'- --gACGCCGCGcguaagcAGCUGuuCCGCuugaauggcaugGCGGGCa -3'
miRNA:   3'- cgaUGUGGCGC-------UUGAU--GGCG------------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 12506 0.67 0.545232
Target:  5'- cCUGCG-CGCcGGCU-UCGCGCGGGUu -3'
miRNA:   3'- cGAUGUgGCGcUUGAuGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 13663 0.67 0.524129
Target:  5'- uGC-GCACCGCGucGCgaaUGCGCaGGCg -3'
miRNA:   3'- -CGaUGUGGCGCu-UGaugGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 13992 0.67 0.566601
Target:  5'- uGCUcacgucCACUuCGAACUGaCGCGCGaGGCg -3'
miRNA:   3'- -CGAu-----GUGGcGCUUGAUgGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 14051 0.68 0.482929
Target:  5'- --gGCGCCGCgucgagcgcauuGAGCgcGCCGCGCcGGCc -3'
miRNA:   3'- cgaUGUGGCG------------CUUGa-UGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 14669 0.7 0.405672
Target:  5'- --aGCGCuCGUGGccgaccGCUACgCGCGCGcGGCg -3'
miRNA:   3'- cgaUGUG-GCGCU------UGAUG-GCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 15180 0.66 0.6426
Target:  5'- aGUgauCGaCGCGAGCgcGCCGCGCGacgucGGCa -3'
miRNA:   3'- -CGau-GUgGCGCUUGa-UGGCGCGC-----CCG- -5'
24115 5' -56.8 NC_005263.2 + 15256 0.67 0.566601
Target:  5'- gGCUACauGCUGCG-GCUugucGCgGCGCugaaGGGCg -3'
miRNA:   3'- -CGAUG--UGGCGCuUGA----UGgCGCG----CCCG- -5'
24115 5' -56.8 NC_005263.2 + 15303 0.73 0.249942
Target:  5'- --gACACUcgucaGCGAGCUGCgcgagGCGCGGGCc -3'
miRNA:   3'- cgaUGUGG-----CGCUUGAUGg----CGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 15389 0.67 0.577367
Target:  5'- cGUUGCAUUgGCGAu---CCGCacgGCGGGCa -3'
miRNA:   3'- -CGAUGUGG-CGCUugauGGCG---CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 15449 0.67 0.534644
Target:  5'- cGCgagGCAgCGCGAAaugagcgacgauUUGCCGUGCuGcGGCg -3'
miRNA:   3'- -CGa--UGUgGCGCUU------------GAUGGCGCG-C-CCG- -5'
24115 5' -56.8 NC_005263.2 + 15735 0.69 0.46292
Target:  5'- -aUGCGCUGuCGGACUAcCCGaccgaGCaGGGCg -3'
miRNA:   3'- cgAUGUGGC-GCUUGAU-GGCg----CG-CCCG- -5'
24115 5' -56.8 NC_005263.2 + 16490 0.76 0.151049
Target:  5'- cGCUGCGCCGCGcg--GCCGuCGCGaccGGCa -3'
miRNA:   3'- -CGAUGUGGCGCuugaUGGC-GCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 16604 0.67 0.566601
Target:  5'- gGCU-CGCgCGCGAGCagcagcucgcGCCGCuGaCGGGCc -3'
miRNA:   3'- -CGAuGUG-GCGCUUGa---------UGGCG-C-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 16715 0.76 0.155221
Target:  5'- aGCUGCAgCGCac-CUACCGCGCGaGCa -3'
miRNA:   3'- -CGAUGUgGCGcuuGAUGGCGCGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 16856 0.66 0.6426
Target:  5'- uGCccgGCGCCGC-----GCCGCGCGGa- -3'
miRNA:   3'- -CGa--UGUGGCGcuugaUGGCGCGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.