miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 39683 0.69 0.414903
Target:  5'- uGCUGCcggaCGCGAACUucacggucGCCGagGCGGcGCg -3'
miRNA:   3'- -CGAUGug--GCGCUUGA--------UGGCg-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 45409 0.7 0.405672
Target:  5'- cGCaUGCACCuGcCGAGCgGCCGCGCGaucaGCu -3'
miRNA:   3'- -CG-AUGUGG-C-GCUUGaUGGCGCGCc---CG- -5'
24115 5' -56.8 NC_005263.2 + 19751 0.72 0.276613
Target:  5'- cGCUggcGCGCUgGCGGcGCUcgugGCCGUGUGGGCa -3'
miRNA:   3'- -CGA---UGUGG-CGCU-UGA----UGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 21909 0.76 0.168371
Target:  5'- cGCcGCAUCGCGcGGCcGCCGCGCGGccGCa -3'
miRNA:   3'- -CGaUGUGGCGC-UUGaUGGCGCGCC--CG- -5'
24115 5' -56.8 NC_005263.2 + 11094 0.68 0.481919
Target:  5'- --gACGCCGCGcguaagcAGCUGuuCCGCuugaauggcaugGCGGGCa -3'
miRNA:   3'- cgaUGUGGCGC-------UUGAU--GGCG------------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 8767 0.69 0.433748
Target:  5'- cGCUGCGCgGCaGGAUgacgccggcCCGCGCGaGGUu -3'
miRNA:   3'- -CGAUGUGgCG-CUUGau-------GGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 44345 0.7 0.405672
Target:  5'- --aACACCGUGccGCUGcCCGCGCGcGaGCa -3'
miRNA:   3'- cgaUGUGGCGCu-UGAU-GGCGCGC-C-CG- -5'
24115 5' -56.8 NC_005263.2 + 29039 0.76 0.16388
Target:  5'- --cGCACCaGCGcGCgcagGCCGCGCGGcGCg -3'
miRNA:   3'- cgaUGUGG-CGCuUGa---UGGCGCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 43245 0.69 0.433748
Target:  5'- gGCUgacGCGCUcgGCGuAACgcucgauugGCUGUGCGGGCg -3'
miRNA:   3'- -CGA---UGUGG--CGC-UUGa--------UGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 31375 0.76 0.151049
Target:  5'- cCUGCuGCUGCGGGCUGCuCGCGCGGuagguGCg -3'
miRNA:   3'- cGAUG-UGGCGCUUGAUG-GCGCGCC-----CG- -5'
24115 5' -56.8 NC_005263.2 + 31497 0.7 0.405672
Target:  5'- --aGCGgCGCGAGCUGCUGCucGCGcGCg -3'
miRNA:   3'- cgaUGUgGCGCUUGAUGGCG--CGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 41852 0.69 0.414903
Target:  5'- aGCUGCccgacggcacgACCGCGccugGCCGCGagcgauCGGGCa -3'
miRNA:   3'- -CGAUG-----------UGGCGCuugaUGGCGC------GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 18593 0.71 0.353086
Target:  5'- uGCUggcGCGCCGaCGGAC-GCCGCaGCGGcGUu -3'
miRNA:   3'- -CGA---UGUGGC-GCUUGaUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 38209 0.72 0.283626
Target:  5'- gGC-ACACCGCucGCgaugGCCGCcgagaagcucuGCGGGCu -3'
miRNA:   3'- -CGaUGUGGCGcuUGa---UGGCG-----------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 26491 0.75 0.197687
Target:  5'- cGCcGCACUGCGccuugauguAACUGuuGCGCGcGGCg -3'
miRNA:   3'- -CGaUGUGGCGC---------UUGAUggCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 30270 0.76 0.172971
Target:  5'- gGCgaaGCGCUGCGcAAUcggGCCGCGCGcGGCa -3'
miRNA:   3'- -CGa--UGUGGCGC-UUGa--UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 9785 0.68 0.493089
Target:  5'- --cGCACCGaacggGGGCgccucGCCGCGUGcGGCa -3'
miRNA:   3'- cgaUGUGGCg----CUUGa----UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 14051 0.68 0.482929
Target:  5'- --gGCGCCGCgucgagcgcauuGAGCgcGCCGCGCcGGCc -3'
miRNA:   3'- cgaUGUGGCG------------CUUGa-UGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 19670 0.69 0.46292
Target:  5'- cCUACGCCGC--GCUGCCcgcgacguucacGCGCGugccGGCg -3'
miRNA:   3'- cGAUGUGGCGcuUGAUGG------------CGCGC----CCG- -5'
24115 5' -56.8 NC_005263.2 + 9499 0.69 0.433748
Target:  5'- cGCUAuccauCGCgugCGCGGGCUgaaucgugcgGCCGUGCGcGGCa -3'
miRNA:   3'- -CGAU-----GUG---GCGCUUGA----------UGGCGCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.