miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 600 0.72 0.283626
Target:  5'- --aGCGCCGCGAugUGCuuCGCGCaaucGGCu -3'
miRNA:   3'- cgaUGUGGCGCUugAUG--GCGCGc---CCG- -5'
24115 5' -56.8 NC_005263.2 + 23372 0.72 0.283626
Target:  5'- uGCUACucgugaaggcuGCCGCGAAC-AUCGCGCGauGCg -3'
miRNA:   3'- -CGAUG-----------UGGCGCUUGaUGGCGCGCc-CG- -5'
24115 5' -56.8 NC_005263.2 + 38209 0.72 0.283626
Target:  5'- gGC-ACACCGCucGCgaugGCCGCcgagaagcucuGCGGGCu -3'
miRNA:   3'- -CGaUGUGGCGcuUGa---UGGCG-----------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 3338 0.72 0.290779
Target:  5'- uGC-GCGCCGCcGGC-GCCGCGCGcGGUc -3'
miRNA:   3'- -CGaUGUGGCGcUUGaUGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 29489 0.72 0.298073
Target:  5'- gGUUGCcaccuGCCGCGAAC-GCCGCuGCGGcGUc -3'
miRNA:   3'- -CGAUG-----UGGCGCUUGaUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 35511 0.72 0.313084
Target:  5'- gGCggugACACuggCGCGccGACUGCgcccggcggCGCGCGGGCg -3'
miRNA:   3'- -CGa---UGUG---GCGC--UUGAUG---------GCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 19025 0.72 0.313084
Target:  5'- cGCUGaACCGCGc-CUAUCGCgccguaGCGGGCc -3'
miRNA:   3'- -CGAUgUGGCGCuuGAUGGCG------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 42046 0.71 0.320802
Target:  5'- gGCUAU-UCGuCGAACUACgGCGCGcaGGCg -3'
miRNA:   3'- -CGAUGuGGC-GCUUGAUGgCGCGC--CCG- -5'
24115 5' -56.8 NC_005263.2 + 46653 0.71 0.328661
Target:  5'- uGCUgcaGCGCCGCGAGC-GCCGCgaagccucGCGcGCa -3'
miRNA:   3'- -CGA---UGUGGCGCUUGaUGGCG--------CGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 18593 0.71 0.353086
Target:  5'- uGCUggcGCGCCGaCGGAC-GCCGCaGCGGcGUu -3'
miRNA:   3'- -CGA---UGUGGC-GCUUGaUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 20308 0.71 0.353086
Target:  5'- cGCgaucACgACgGCGAugUACCGCGCGaagcauGGCc -3'
miRNA:   3'- -CGa---UG-UGgCGCUugAUGGCGCGC------CCG- -5'
24115 5' -56.8 NC_005263.2 + 44801 0.7 0.361508
Target:  5'- --aACACCGCGcg--GCCGCGCccaGGCa -3'
miRNA:   3'- cgaUGUGGCGCuugaUGGCGCGc--CCG- -5'
24115 5' -56.8 NC_005263.2 + 19044 0.7 0.378767
Target:  5'- uGC-GCGCCGCcccgaGGACgcGCCGCGCGGccuGCg -3'
miRNA:   3'- -CGaUGUGGCG-----CUUGa-UGGCGCGCC---CG- -5'
24115 5' -56.8 NC_005263.2 + 1425 0.7 0.387601
Target:  5'- cGC-GCGCCGCcuuGGCUG-CGCGCGaGGCu -3'
miRNA:   3'- -CGaUGUGGCGc--UUGAUgGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 29025 0.7 0.387601
Target:  5'- uGC-GCACCGCGAcGCcgUACUGaCGCGcGGCc -3'
miRNA:   3'- -CGaUGUGGCGCU-UG--AUGGC-GCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 22100 0.7 0.387601
Target:  5'- aGCcAUuCgGCGAAgUGCCGCGCGaguGGCa -3'
miRNA:   3'- -CGaUGuGgCGCUUgAUGGCGCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 10660 0.7 0.39657
Target:  5'- --gACGCCGCGcag-ACCGCGCGcGCc -3'
miRNA:   3'- cgaUGUGGCGCuugaUGGCGCGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 44345 0.7 0.405672
Target:  5'- --aACACCGUGccGCUGcCCGCGCGcGaGCa -3'
miRNA:   3'- cgaUGUGGCGCu-UGAU-GGCGCGC-C-CG- -5'
24115 5' -56.8 NC_005263.2 + 22291 0.7 0.405672
Target:  5'- gGCUcgGCAUUGCGAACccgaaugGCagCGuCGCGGGCg -3'
miRNA:   3'- -CGA--UGUGGCGCUUGa------UG--GC-GCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 14669 0.7 0.405672
Target:  5'- --aGCGCuCGUGGccgaccGCUACgCGCGCGcGGCg -3'
miRNA:   3'- cgaUGUG-GCGCU------UGAUG-GCGCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.