miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 46051 1.14 0.000305
Target:  5'- gGCUACACCGCGAACUACCGCGCGGGCg -3'
miRNA:   3'- -CGAUGUGGCGCUUGAUGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 21169 0.82 0.058018
Target:  5'- gGCUACGCCacggggccggacGCGGACgcgcGCgGCGCGGGCg -3'
miRNA:   3'- -CGAUGUGG------------CGCUUGa---UGgCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 38565 0.77 0.146979
Target:  5'- cGCgaGCGCCGCGucggucGCUGCCGCGCacGGCc -3'
miRNA:   3'- -CGa-UGUGGCGCu-----UGAUGGCGCGc-CCG- -5'
24115 5' -56.8 NC_005263.2 + 31375 0.76 0.151049
Target:  5'- cCUGCuGCUGCGGGCUGCuCGCGCGGuagguGCg -3'
miRNA:   3'- cGAUG-UGGCGCUUGAUG-GCGCGCC-----CG- -5'
24115 5' -56.8 NC_005263.2 + 16490 0.76 0.151049
Target:  5'- cGCUGCGCCGCGcg--GCCGuCGCGaccGGCa -3'
miRNA:   3'- -CGAUGUGGCGCuugaUGGC-GCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 16715 0.76 0.155221
Target:  5'- aGCUGCAgCGCac-CUACCGCGCGaGCa -3'
miRNA:   3'- -CGAUGUgGCGcuuGAUGGCGCGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 29039 0.76 0.16388
Target:  5'- --cGCACCaGCGcGCgcagGCCGCGCGGcGCg -3'
miRNA:   3'- cgaUGUGG-CGCuUGa---UGGCGCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 21909 0.76 0.168371
Target:  5'- cGCcGCAUCGCGcGGCcGCCGCGCGGccGCa -3'
miRNA:   3'- -CGaUGUGGCGC-UUGaUGGCGCGCC--CG- -5'
24115 5' -56.8 NC_005263.2 + 17877 0.76 0.168371
Target:  5'- cGCUuCGCCGCGAACgaucagucgACCG-GCGGcGCg -3'
miRNA:   3'- -CGAuGUGGCGCUUGa--------UGGCgCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 30270 0.76 0.172971
Target:  5'- gGCgaaGCGCUGCGcAAUcggGCCGCGCGcGGCa -3'
miRNA:   3'- -CGa--UGUGGCGC-UUGa--UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 29291 0.75 0.190979
Target:  5'- aGCUGCACgGCGGccgggucggcaugcGC-AUCGCGCGcGGCg -3'
miRNA:   3'- -CGAUGUGgCGCU--------------UGaUGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 38594 0.75 0.191998
Target:  5'- cGCU-CACgGCGAcgacacaGCUGCUGUuuGCGGGCa -3'
miRNA:   3'- -CGAuGUGgCGCU-------UGAUGGCG--CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 35635 0.75 0.197687
Target:  5'- uGC-GCGCCGcCGGuauCguguuCCGCGCGGGCg -3'
miRNA:   3'- -CGaUGUGGC-GCUu--Gau---GGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 26491 0.75 0.197687
Target:  5'- cGCcGCACUGCGccuugauguAACUGuuGCGCGcGGCg -3'
miRNA:   3'- -CGaUGUGGCGC---------UUGAUggCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 30693 0.75 0.199793
Target:  5'- uGUUGCACCuGCGAcaccgcccgccaggcGCgcgGCCGCGCcGGCa -3'
miRNA:   3'- -CGAUGUGG-CGCU---------------UGa--UGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 26190 0.73 0.243614
Target:  5'- uCUGCgGCCGCGcGGCgGCCGCGCGaugcGGCg -3'
miRNA:   3'- cGAUG-UGGCGC-UUGaUGGCGCGC----CCG- -5'
24115 5' -56.8 NC_005263.2 + 39692 0.73 0.249303
Target:  5'- cGCgaugggGCGagCGCGAGCUggaaaugGCCgGCGCGGGCc -3'
miRNA:   3'- -CGa-----UGUg-GCGCUUGA-------UGG-CGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 15303 0.73 0.249942
Target:  5'- --gACACUcgucaGCGAGCUGCgcgagGCGCGGGCc -3'
miRNA:   3'- cgaUGUGG-----CGCUUGAUGg----CGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 7485 0.73 0.256404
Target:  5'- cGCUugGCCuCGAAgUGCCGCGCaccgcugacGGCg -3'
miRNA:   3'- -CGAugUGGcGCUUgAUGGCGCGc--------CCG- -5'
24115 5' -56.8 NC_005263.2 + 19751 0.72 0.276613
Target:  5'- cGCUggcGCGCUgGCGGcGCUcgugGCCGUGUGGGCa -3'
miRNA:   3'- -CGA---UGUGG-CGCU-UGA----UGGCGCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.