Results 1 - 20 of 139 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 34901 | 0.66 | 0.6426 |
Target: 5'- cGCUcACGCCuggcGCGAAUgucgACCugugaugcGCGCGGaGCu -3' miRNA: 3'- -CGA-UGUGG----CGCUUGa---UGG--------CGCGCC-CG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 36935 | 0.66 | 0.588178 |
Target: 5'- gGCUuaACCGCGugucGCaGCCGgccagcuaggcUGCGGGCg -3' miRNA: 3'- -CGAugUGGCGCu---UGaUGGC-----------GCGCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 42673 | 0.66 | 0.587095 |
Target: 5'- aCUGCGCCGaCGGAUacggugaUGCUGauCGCaGGGCg -3' miRNA: 3'- cGAUGUGGC-GCUUG-------AUGGC--GCG-CCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 16856 | 0.66 | 0.6426 |
Target: 5'- uGCccgGCGCCGC-----GCCGCGCGGa- -3' miRNA: 3'- -CGa--UGUGGCGcuugaUGGCGCGCCcg -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 5606 | 0.66 | 0.588178 |
Target: 5'- --cGCACgGCGAG--GCCGUGCGG-Ca -3' miRNA: 3'- cgaUGUGgCGCUUgaUGGCGCGCCcG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 47151 | 0.66 | 0.588178 |
Target: 5'- gGCgacCGCCGCu-ACgucGCCGCucGCGGGUg -3' miRNA: 3'- -CGau-GUGGCGcuUGa--UGGCG--CGCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 4169 | 0.66 | 0.599025 |
Target: 5'- aGC-GCGCCGCGcuCgUGCUGCaGCGGcGUg -3' miRNA: 3'- -CGaUGUGGCGCuuG-AUGGCG-CGCC-CG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 4639 | 0.66 | 0.599025 |
Target: 5'- aGCgcCAUCGCGAuc-AUgGCGaCGGGCa -3' miRNA: 3'- -CGauGUGGCGCUugaUGgCGC-GCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 377 | 0.66 | 0.609899 |
Target: 5'- aGCUGCagGCCGacaGAAUUGCCgaGCGCGuagaGCg -3' miRNA: 3'- -CGAUG--UGGCg--CUUGAUGG--CGCGCc---CG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 37477 | 0.66 | 0.588178 |
Target: 5'- cCUGUACCGCGAuccgACCGaacuCGGGCa -3' miRNA: 3'- cGAUGUGGCGCUuga-UGGCgc--GCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 887 | 0.66 | 0.597939 |
Target: 5'- cGCUucguucaGCGCgGCGGucGCcGCCG-GCGGGUu -3' miRNA: 3'- -CGA-------UGUGgCGCU--UGaUGGCgCGCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 47398 | 0.66 | 0.609899 |
Target: 5'- cGCcacgGCGCuCGCGGGCggcggcacgAUCGCGCucaccgagcacGGGCa -3' miRNA: 3'- -CGa---UGUG-GCGCUUGa--------UGGCGCG-----------CCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 6276 | 0.66 | 0.6426 |
Target: 5'- aGCUugACUGgGAACggGCUGCGCa--- -3' miRNA: 3'- -CGAugUGGCgCUUGa-UGGCGCGcccg -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 15180 | 0.66 | 0.6426 |
Target: 5'- aGUgauCGaCGCGAGCgcGCCGCGCGacgucGGCa -3' miRNA: 3'- -CGau-GUgGCGCUUGa-UGGCGCGC-----CCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 45434 | 0.66 | 0.636058 |
Target: 5'- gGCgcgACACUGCaGGCUGCCGgugucgccgccgauaCGCcGGCa -3' miRNA: 3'- -CGa--UGUGGCGcUUGAUGGC---------------GCGcCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 29934 | 0.66 | 0.636058 |
Target: 5'- aGC-GCGCCGCagaGAAUUGCCcagagaucggccugcGCagcgGCGGGCa -3' miRNA: 3'- -CGaUGUGGCG---CUUGAUGG---------------CG----CGCCCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 10843 | 0.66 | 0.631696 |
Target: 5'- uGCUucguUGgUGCGGGCUACgGCGuCGcGGCg -3' miRNA: 3'- -CGAu---GUgGCGCUUGAUGgCGC-GC-CCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 18414 | 0.66 | 0.630606 |
Target: 5'- uGCUACGCCGUcuGCUucgucggcgaugaACCGCuCGaGGUg -3' miRNA: 3'- -CGAUGUGGCGcuUGA-------------UGGCGcGC-CCG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 2005 | 0.66 | 0.620793 |
Target: 5'- cCUAgGCCGCGccaaauCCGCaGCGGcGCa -3' miRNA: 3'- cGAUgUGGCGCuugau-GGCG-CGCC-CG- -5' |
|||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 22470 | 0.66 | 0.620793 |
Target: 5'- aGCgACAgCGCGAucaACUACgGCGCGa-- -3' miRNA: 3'- -CGaUGUgGCGCU---UGAUGgCGCGCccg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home