miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 377 0.66 0.609899
Target:  5'- aGCUGCagGCCGacaGAAUUGCCgaGCGCGuagaGCg -3'
miRNA:   3'- -CGAUG--UGGCg--CUUGAUGG--CGCGCc---CG- -5'
24115 5' -56.8 NC_005263.2 + 600 0.72 0.283626
Target:  5'- --aGCGCCGCGAugUGCuuCGCGCaaucGGCu -3'
miRNA:   3'- cgaUGUGGCGCUugAUG--GCGCGc---CCG- -5'
24115 5' -56.8 NC_005263.2 + 711 0.68 0.513695
Target:  5'- cGCcGC-CCGCGAGC-GCCGUgGCGaGGUu -3'
miRNA:   3'- -CGaUGuGGCGCUUGaUGGCG-CGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 887 0.66 0.597939
Target:  5'- cGCUucguucaGCGCgGCGGucGCcGCCG-GCGGGUu -3'
miRNA:   3'- -CGA-------UGUGgCGCU--UGaUGGCgCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 1151 0.66 0.63933
Target:  5'- cGUUGCACCGCGuauccgaucgccucGGCUugCuu-CGGGCu -3'
miRNA:   3'- -CGAUGUGGCGC--------------UUGAugGcgcGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 1425 0.7 0.387601
Target:  5'- cGC-GCGCCGCcuuGGCUG-CGCGCGaGGCu -3'
miRNA:   3'- -CGaUGUGGCGc--UUGAUgGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 2005 0.66 0.620793
Target:  5'- cCUAgGCCGCGccaaauCCGCaGCGGcGCa -3'
miRNA:   3'- cGAUgUGGCGCuugau-GGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 2616 0.67 0.577367
Target:  5'- --aAUugCGCGAcagGCcgACCGCGCGGu- -3'
miRNA:   3'- cgaUGugGCGCU---UGa-UGGCGCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 3194 0.67 0.570901
Target:  5'- cGCUGCGCgucgGCGAGCgcggccaggaucggGCCGaccuCGGGCg -3'
miRNA:   3'- -CGAUGUGg---CGCUUGa-------------UGGCgc--GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 3338 0.72 0.290779
Target:  5'- uGC-GCGCCGCcGGC-GCCGCGCGcGGUc -3'
miRNA:   3'- -CGaUGUGGCGcUUGaUGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 4169 0.66 0.599025
Target:  5'- aGC-GCGCCGCGcuCgUGCUGCaGCGGcGUg -3'
miRNA:   3'- -CGaUGUGGCGCuuG-AUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 4639 0.66 0.599025
Target:  5'- aGCgcCAUCGCGAuc-AUgGCGaCGGGCa -3'
miRNA:   3'- -CGauGUGGCGCUugaUGgCGC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 5201 0.66 0.628425
Target:  5'- uGCagGCGCgGCGucGCUACCGuCGCGaauuccggauacucGGCu -3'
miRNA:   3'- -CGa-UGUGgCGCu-UGAUGGC-GCGC--------------CCG- -5'
24115 5' -56.8 NC_005263.2 + 5606 0.66 0.588178
Target:  5'- --cGCACgGCGAG--GCCGUGCGG-Ca -3'
miRNA:   3'- cgaUGUGgCGCUUgaUGGCGCGCCcG- -5'
24115 5' -56.8 NC_005263.2 + 6276 0.66 0.6426
Target:  5'- aGCUugACUGgGAACggGCUGCGCa--- -3'
miRNA:   3'- -CGAugUGGCgCUUGa-UGGCGCGcccg -5'
24115 5' -56.8 NC_005263.2 + 6682 0.67 0.534644
Target:  5'- uGUU-CACCGCGAaccacaugaaguGCUugCG-GuCGGGCg -3'
miRNA:   3'- -CGAuGUGGCGCU------------UGAugGCgC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 7485 0.73 0.256404
Target:  5'- cGCUugGCCuCGAAgUGCCGCGCaccgcugacGGCg -3'
miRNA:   3'- -CGAugUGGcGCUUgAUGGCGCGc--------CCG- -5'
24115 5' -56.8 NC_005263.2 + 7832 0.66 0.629515
Target:  5'- uCUGCgcaACCGCGAACgggcggaagaucACCGCGCcccaGGUg -3'
miRNA:   3'- cGAUG---UGGCGCUUGa-----------UGGCGCGc---CCG- -5'
24115 5' -56.8 NC_005263.2 + 8767 0.69 0.433748
Target:  5'- cGCUGCGCgGCaGGAUgacgccggcCCGCGCGaGGUu -3'
miRNA:   3'- -CGAUGUGgCG-CUUGau-------GGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 9499 0.69 0.433748
Target:  5'- cGCUAuccauCGCgugCGCGGGCUgaaucgugcgGCCGUGCGcGGCa -3'
miRNA:   3'- -CGAU-----GUG---GCGCUUGA----------UGGCGCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.