miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 47660 0.68 0.479901
Target:  5'- --aACGCCGUGAagauugcguuccgcACUGCCGCGCa-GCc -3'
miRNA:   3'- cgaUGUGGCGCU--------------UGAUGGCGCGccCG- -5'
24115 5' -56.8 NC_005263.2 + 47398 0.66 0.609899
Target:  5'- cGCcacgGCGCuCGCGGGCggcggcacgAUCGCGCucaccgagcacGGGCa -3'
miRNA:   3'- -CGa---UGUG-GCGCUUGa--------UGGCGCG-----------CCCG- -5'
24115 5' -56.8 NC_005263.2 + 47151 0.66 0.588178
Target:  5'- gGCgacCGCCGCu-ACgucGCCGCucGCGGGUg -3'
miRNA:   3'- -CGau-GUGGCGcuUGa--UGGCG--CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 46926 0.7 0.409349
Target:  5'- cGCU--GCCGCGcAGCacgaggcacaagucGCCGCGaCGGGCg -3'
miRNA:   3'- -CGAugUGGCGC-UUGa-------------UGGCGC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 46653 0.71 0.328661
Target:  5'- uGCUgcaGCGCCGCGAGC-GCCGCgaagccucGCGcGCa -3'
miRNA:   3'- -CGA---UGUGGCGCUUGaUGGCG--------CGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 46324 0.69 0.433748
Target:  5'- gGCUcgaACGCCGUGAuCUAagCGgGCGGGg -3'
miRNA:   3'- -CGA---UGUGGCGCUuGAUg-GCgCGCCCg -5'
24115 5' -56.8 NC_005263.2 + 46051 1.14 0.000305
Target:  5'- gGCUACACCGCGAACUACCGCGCGGGCg -3'
miRNA:   3'- -CGAUGUGGCGCUUGAUGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 45887 0.66 0.6426
Target:  5'- --cACGCCGUGA----UCGCGCagGGGCg -3'
miRNA:   3'- cgaUGUGGCGCUugauGGCGCG--CCCG- -5'
24115 5' -56.8 NC_005263.2 + 45740 0.69 0.424263
Target:  5'- gGUUACGCCGCGucgaucAACUuccaGCUGCGCaacGGCc -3'
miRNA:   3'- -CGAUGUGGCGC------UUGA----UGGCGCGc--CCG- -5'
24115 5' -56.8 NC_005263.2 + 45434 0.66 0.636058
Target:  5'- gGCgcgACACUGCaGGCUGCCGgugucgccgccgauaCGCcGGCa -3'
miRNA:   3'- -CGa--UGUGGCGcUUGAUGGC---------------GCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 45409 0.7 0.405672
Target:  5'- cGCaUGCACCuGcCGAGCgGCCGCGCGaucaGCu -3'
miRNA:   3'- -CG-AUGUGG-C-GCUUGaUGGCGCGCc---CG- -5'
24115 5' -56.8 NC_005263.2 + 45117 0.68 0.478893
Target:  5'- -aUGCGCCgGCGAGCgucuacggcauuCCGCuGaCGGGCa -3'
miRNA:   3'- cgAUGUGG-CGCUUGau----------GGCG-C-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 44804 0.68 0.492069
Target:  5'- ----aACCGCGcGCcGCCGCGCgcacaaggagaaaGGGCg -3'
miRNA:   3'- cgaugUGGCGCuUGaUGGCGCG-------------CCCG- -5'
24115 5' -56.8 NC_005263.2 + 44801 0.7 0.361508
Target:  5'- --aACACCGCGcg--GCCGCGCccaGGCa -3'
miRNA:   3'- cgaUGUGGCGCuugaUGGCGCGc--CCG- -5'
24115 5' -56.8 NC_005263.2 + 44747 0.68 0.493089
Target:  5'- gGC-GCACUGUcuGGucGCUcgACCGCGCGcGGCg -3'
miRNA:   3'- -CGaUGUGGCG--CU--UGA--UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 44649 0.68 0.513695
Target:  5'- cGCUACAUgGUcaAGCUGCaCGCGCaGGUc -3'
miRNA:   3'- -CGAUGUGgCGc-UUGAUG-GCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 44345 0.7 0.405672
Target:  5'- --aACACCGUGccGCUGcCCGCGCGcGaGCa -3'
miRNA:   3'- cgaUGUGGCGCu-UGAU-GGCGCGC-C-CG- -5'
24115 5' -56.8 NC_005263.2 + 43596 0.67 0.534644
Target:  5'- gGCUACGaCGCGGAag-UCGCGaUGGGCc -3'
miRNA:   3'- -CGAUGUgGCGCUUgauGGCGC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 43500 0.67 0.534644
Target:  5'- --gGCACCuCGaAGCUGCCG-GCGcGGCc -3'
miRNA:   3'- cgaUGUGGcGC-UUGAUGGCgCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 43245 0.69 0.433748
Target:  5'- gGCUgacGCGCUcgGCGuAACgcucgauugGCUGUGCGGGCg -3'
miRNA:   3'- -CGA---UGUGG--CGC-UUGa--------UGGCGCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.