miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 21169 0.82 0.058018
Target:  5'- gGCUACGCCacggggccggacGCGGACgcgcGCgGCGCGGGCg -3'
miRNA:   3'- -CGAUGUGG------------CGCUUGa---UGgCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 44345 0.7 0.405672
Target:  5'- --aACACCGUGccGCUGcCCGCGCGcGaGCa -3'
miRNA:   3'- cgaUGUGGCGCu-UGAU-GGCGCGC-C-CG- -5'
24115 5' -56.8 NC_005263.2 + 45409 0.7 0.405672
Target:  5'- cGCaUGCACCuGcCGAGCgGCCGCGCGaucaGCu -3'
miRNA:   3'- -CG-AUGUGG-C-GCUUGaUGGCGCGCc---CG- -5'
24115 5' -56.8 NC_005263.2 + 16856 0.66 0.6426
Target:  5'- uGCccgGCGCCGC-----GCCGCGCGGa- -3'
miRNA:   3'- -CGa--UGUGGCGcuugaUGGCGCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 30270 0.76 0.172971
Target:  5'- gGCgaaGCGCUGCGcAAUcggGCCGCGCGcGGCa -3'
miRNA:   3'- -CGa--UGUGGCGC-UUGa--UGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 29291 0.75 0.190979
Target:  5'- aGCUGCACgGCGGccgggucggcaugcGC-AUCGCGCGcGGCg -3'
miRNA:   3'- -CGAUGUGgCGCU--------------UGaUGGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 26491 0.75 0.197687
Target:  5'- cGCcGCACUGCGccuugauguAACUGuuGCGCGcGGCg -3'
miRNA:   3'- -CGaUGUGGCGC---------UUGAUggCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 30693 0.75 0.199793
Target:  5'- uGUUGCACCuGCGAcaccgcccgccaggcGCgcgGCCGCGCcGGCa -3'
miRNA:   3'- -CGAUGUGG-CGCU---------------UGa--UGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 38209 0.72 0.283626
Target:  5'- gGC-ACACCGCucGCgaugGCCGCcgagaagcucuGCGGGCu -3'
miRNA:   3'- -CGaUGUGGCGcuUGa---UGGCG-----------CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 22100 0.7 0.387601
Target:  5'- aGCcAUuCgGCGAAgUGCCGCGCGaguGGCa -3'
miRNA:   3'- -CGaUGuGgCGCUUgAUGGCGCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 46653 0.71 0.328661
Target:  5'- uGCUgcaGCGCCGCGAGC-GCCGCgaagccucGCGcGCa -3'
miRNA:   3'- -CGA---UGUGGCGCUUGaUGGCG--------CGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 19751 0.72 0.276613
Target:  5'- cGCUggcGCGCUgGCGGcGCUcgugGCCGUGUGGGCa -3'
miRNA:   3'- -CGA---UGUGG-CGCU-UGA----UGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 31375 0.76 0.151049
Target:  5'- cCUGCuGCUGCGGGCUGCuCGCGCGGuagguGCg -3'
miRNA:   3'- cGAUG-UGGCGCUUGAUG-GCGCGCC-----CG- -5'
24115 5' -56.8 NC_005263.2 + 18593 0.71 0.353086
Target:  5'- uGCUggcGCGCCGaCGGAC-GCCGCaGCGGcGUu -3'
miRNA:   3'- -CGA---UGUGGC-GCUUGaUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 29039 0.76 0.16388
Target:  5'- --cGCACCaGCGcGCgcagGCCGCGCGGcGCg -3'
miRNA:   3'- cgaUGUGG-CGCuUGa---UGGCGCGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 7485 0.73 0.256404
Target:  5'- cGCUugGCCuCGAAgUGCCGCGCaccgcugacGGCg -3'
miRNA:   3'- -CGAugUGGcGCUUgAUGGCGCGc--------CCG- -5'
24115 5' -56.8 NC_005263.2 + 44801 0.7 0.361508
Target:  5'- --aACACCGCGcg--GCCGCGCccaGGCa -3'
miRNA:   3'- cgaUGUGGCGCuugaUGGCGCGc--CCG- -5'
24115 5' -56.8 NC_005263.2 + 31497 0.7 0.405672
Target:  5'- --aGCGgCGCGAGCUGCUGCucGCGcGCg -3'
miRNA:   3'- cgaUGUgGCGCUUGAUGGCG--CGCcCG- -5'
24115 5' -56.8 NC_005263.2 + 21909 0.76 0.168371
Target:  5'- cGCcGCAUCGCGcGGCcGCCGCGCGGccGCa -3'
miRNA:   3'- -CGaUGUGGCGC-UUGaUGGCGCGCC--CG- -5'
24115 5' -56.8 NC_005263.2 + 38594 0.75 0.191998
Target:  5'- cGCU-CACgGCGAcgacacaGCUGCUGUuuGCGGGCa -3'
miRNA:   3'- -CGAuGUGgCGCU-------UGAUGGCG--CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.