Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24115 | 5' | -56.8 | NC_005263.2 | + | 27954 | 0.67 | 0.545232 |
Target: 5'- aGCcggACGgCGCGGauggcccagaGCUGCUGCGCGcGaGCg -3' miRNA: 3'- -CGa--UGUgGCGCU----------UGAUGGCGCGC-C-CG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 36935 | 0.66 | 0.588178 |
Target: 5'- gGCUuaACCGCGugucGCaGCCGgccagcuaggcUGCGGGCg -3' miRNA: 3'- -CGAugUGGCGCu---UGaUGGC-----------GCGCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 29421 | 0.67 | 0.577367 |
Target: 5'- uGCcGCGCCGCuAGCuUGCUGCGCGa-- -3' miRNA: 3'- -CGaUGUGGCGcUUG-AUGGCGCGCccg -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 29063 | 0.67 | 0.577367 |
Target: 5'- --aGCACgaCGCGGcccGCUACgGCGCGauaGGCg -3' miRNA: 3'- cgaUGUG--GCGCU---UGAUGgCGCGC---CCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 3194 | 0.67 | 0.570901 |
Target: 5'- cGCUGCGCgucgGCGAGCgcggccaggaucggGCCGaccuCGGGCg -3' miRNA: 3'- -CGAUGUGg---CGCUUGa-------------UGGCgc--GCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 15256 | 0.67 | 0.566601 |
Target: 5'- gGCUACauGCUGCG-GCUugucGCgGCGCugaaGGGCg -3' miRNA: 3'- -CGAUG--UGGCGCuUGA----UGgCGCG----CCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 34253 | 0.67 | 0.566601 |
Target: 5'- uGCUGC-UCGCGcAGCUgcccgaguACCGCGCGauGCa -3' miRNA: 3'- -CGAUGuGGCGC-UUGA--------UGGCGCGCc-CG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 16604 | 0.67 | 0.566601 |
Target: 5'- gGCU-CGCgCGCGAGCagcagcucgcGCCGCuGaCGGGCc -3' miRNA: 3'- -CGAuGUG-GCGCUUGa---------UGGCG-C-GCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 33074 | 0.67 | 0.55375 |
Target: 5'- cGgUACGCCuuggucgGCGAaugaucuGCUugCGCGCGuucGGCg -3' miRNA: 3'- -CgAUGUGG-------CGCU-------UGAugGCGCGC---CCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 37477 | 0.66 | 0.588178 |
Target: 5'- cCUGUACCGCGAuccgACCGaacuCGGGCa -3' miRNA: 3'- cGAUGUGGCGCUuga-UGGCgc--GCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 887 | 0.66 | 0.597939 |
Target: 5'- cGCUucguucaGCGCgGCGGucGCcGCCG-GCGGGUu -3' miRNA: 3'- -CGA-------UGUGgCGCU--UGaUGGCgCGCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 47398 | 0.66 | 0.609899 |
Target: 5'- cGCcacgGCGCuCGCGGGCggcggcacgAUCGCGCucaccgagcacGGGCa -3' miRNA: 3'- -CGa---UGUG-GCGCUUGa--------UGGCGCG-----------CCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 6276 | 0.66 | 0.6426 |
Target: 5'- aGCUugACUGgGAACggGCUGCGCa--- -3' miRNA: 3'- -CGAugUGGCgCUUGa-UGGCGCGcccg -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 15180 | 0.66 | 0.6426 |
Target: 5'- aGUgauCGaCGCGAGCgcGCCGCGCGacgucGGCa -3' miRNA: 3'- -CGau-GUgGCGCUUGa-UGGCGCGC-----CCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 45434 | 0.66 | 0.636058 |
Target: 5'- gGCgcgACACUGCaGGCUGCCGgugucgccgccgauaCGCcGGCa -3' miRNA: 3'- -CGa--UGUGGCGcUUGAUGGC---------------GCGcCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 29934 | 0.66 | 0.636058 |
Target: 5'- aGC-GCGCCGCagaGAAUUGCCcagagaucggccugcGCagcgGCGGGCa -3' miRNA: 3'- -CGaUGUGGCG---CUUGAUGG---------------CG----CGCCCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 10843 | 0.66 | 0.631696 |
Target: 5'- uGCUucguUGgUGCGGGCUACgGCGuCGcGGCg -3' miRNA: 3'- -CGAu---GUgGCGCUUGAUGgCGC-GC-CCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 18414 | 0.66 | 0.630606 |
Target: 5'- uGCUACGCCGUcuGCUucgucggcgaugaACCGCuCGaGGUg -3' miRNA: 3'- -CGAUGUGGCGcuUGA-------------UGGCGcGC-CCG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 2005 | 0.66 | 0.620793 |
Target: 5'- cCUAgGCCGCGccaaauCCGCaGCGGcGCa -3' miRNA: 3'- cGAUgUGGCGCuugau-GGCG-CGCC-CG- -5' |
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24115 | 5' | -56.8 | NC_005263.2 | + | 22470 | 0.66 | 0.620793 |
Target: 5'- aGCgACAgCGCGAucaACUACgGCGCGa-- -3' miRNA: 3'- -CGaUGUgGCGCU---UGAUGgCGCGCccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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