miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 30148 0.66 0.609899
Target:  5'- cGCUggAUGCCGUucacGAGCUG--GCGCGGGUc -3'
miRNA:   3'- -CGA--UGUGGCG----CUUGAUggCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 47398 0.66 0.609899
Target:  5'- cGCcacgGCGCuCGCGGGCggcggcacgAUCGCGCucaccgagcacGGGCa -3'
miRNA:   3'- -CGa---UGUG-GCGCUUGa--------UGGCGCG-----------CCCG- -5'
24115 5' -56.8 NC_005263.2 + 4639 0.66 0.599025
Target:  5'- aGCgcCAUCGCGAuc-AUgGCGaCGGGCa -3'
miRNA:   3'- -CGauGUGGCGCUugaUGgCGC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 4169 0.66 0.599025
Target:  5'- aGC-GCGCCGCGcuCgUGCUGCaGCGGcGUg -3'
miRNA:   3'- -CGaUGUGGCGCuuG-AUGGCG-CGCC-CG- -5'
24115 5' -56.8 NC_005263.2 + 887 0.66 0.597939
Target:  5'- cGCUucguucaGCGCgGCGGucGCcGCCG-GCGGGUu -3'
miRNA:   3'- -CGA-------UGUGgCGCU--UGaUGGCgCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 37477 0.66 0.588178
Target:  5'- cCUGUACCGCGAuccgACCGaacuCGGGCa -3'
miRNA:   3'- cGAUGUGGCGCUuga-UGGCgc--GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 36935 0.66 0.588178
Target:  5'- gGCUuaACCGCGugucGCaGCCGgccagcuaggcUGCGGGCg -3'
miRNA:   3'- -CGAugUGGCGCu---UGaUGGC-----------GCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 5606 0.66 0.588178
Target:  5'- --cGCACgGCGAG--GCCGUGCGG-Ca -3'
miRNA:   3'- cgaUGUGgCGCUUgaUGGCGCGCCcG- -5'
24115 5' -56.8 NC_005263.2 + 47151 0.66 0.588178
Target:  5'- gGCgacCGCCGCu-ACgucGCCGCucGCGGGUg -3'
miRNA:   3'- -CGau-GUGGCGcuUGa--UGGCG--CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 42673 0.66 0.587095
Target:  5'- aCUGCGCCGaCGGAUacggugaUGCUGauCGCaGGGCg -3'
miRNA:   3'- cGAUGUGGC-GCUUG-------AUGGC--GCG-CCCG- -5'
24115 5' -56.8 NC_005263.2 + 2616 0.67 0.577367
Target:  5'- --aAUugCGCGAcagGCcgACCGCGCGGu- -3'
miRNA:   3'- cgaUGugGCGCU---UGa-UGGCGCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 15389 0.67 0.577367
Target:  5'- cGUUGCAUUgGCGAu---CCGCacgGCGGGCa -3'
miRNA:   3'- -CGAUGUGG-CGCUugauGGCG---CGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 29421 0.67 0.577367
Target:  5'- uGCcGCGCCGCuAGCuUGCUGCGCGa-- -3'
miRNA:   3'- -CGaUGUGGCGcUUG-AUGGCGCGCccg -5'
24115 5' -56.8 NC_005263.2 + 29063 0.67 0.577367
Target:  5'- --aGCACgaCGCGGcccGCUACgGCGCGauaGGCg -3'
miRNA:   3'- cgaUGUG--GCGCU---UGAUGgCGCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 3194 0.67 0.570901
Target:  5'- cGCUGCGCgucgGCGAGCgcggccaggaucggGCCGaccuCGGGCg -3'
miRNA:   3'- -CGAUGUGg---CGCUUGa-------------UGGCgc--GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 18136 0.67 0.566601
Target:  5'- cGCUgaucGCGCUGCccGCcGCUGCGCaGGCc -3'
miRNA:   3'- -CGA----UGUGGCGcuUGaUGGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 13992 0.67 0.566601
Target:  5'- uGCUcacgucCACUuCGAACUGaCGCGCGaGGCg -3'
miRNA:   3'- -CGAu-----GUGGcGCUUGAUgGCGCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 15256 0.67 0.566601
Target:  5'- gGCUACauGCUGCG-GCUugucGCgGCGCugaaGGGCg -3'
miRNA:   3'- -CGAUG--UGGCGCuUGA----UGgCGCG----CCCG- -5'
24115 5' -56.8 NC_005263.2 + 34253 0.67 0.566601
Target:  5'- uGCUGC-UCGCGcAGCUgcccgaguACCGCGCGauGCa -3'
miRNA:   3'- -CGAUGuGGCGC-UUGA--------UGGCGCGCc-CG- -5'
24115 5' -56.8 NC_005263.2 + 16604 0.67 0.566601
Target:  5'- gGCU-CGCgCGCGAGCagcagcucgcGCCGCuGaCGGGCc -3'
miRNA:   3'- -CGAuGUG-GCGCUUGa---------UGGCG-C-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.