miRNA display CGI


Results 41 - 60 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 5' -56.8 NC_005263.2 + 33074 0.67 0.55375
Target:  5'- cGgUACGCCuuggucgGCGAaugaucuGCUugCGCGCGuucGGCg -3'
miRNA:   3'- -CgAUGUGG-------CGCU-------UGAugGCGCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 12506 0.67 0.545232
Target:  5'- cCUGCG-CGCcGGCU-UCGCGCGGGUu -3'
miRNA:   3'- cGAUGUgGCGcUUGAuGGCGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 21812 0.67 0.545232
Target:  5'- aGCUG-GCCgGCGAGCaaGCCauucuCGCGGGCg -3'
miRNA:   3'- -CGAUgUGG-CGCUUGa-UGGc----GCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 27954 0.67 0.545232
Target:  5'- aGCcggACGgCGCGGauggcccagaGCUGCUGCGCGcGaGCg -3'
miRNA:   3'- -CGa--UGUgGCGCU----------UGAUGGCGCGC-C-CG- -5'
24115 5' -56.8 NC_005263.2 + 30276 0.67 0.54417
Target:  5'- cGCaUAUuUCGCGAACguguCCGCGacagcgcCGGGCg -3'
miRNA:   3'- -CG-AUGuGGCGCUUGau--GGCGC-------GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 23806 0.67 0.534644
Target:  5'- uGCgACGCgCGCGAGCcaAUCGCuCGGGUu -3'
miRNA:   3'- -CGaUGUG-GCGCUUGa-UGGCGcGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 15449 0.67 0.534644
Target:  5'- cGCgagGCAgCGCGAAaugagcgacgauUUGCCGUGCuGcGGCg -3'
miRNA:   3'- -CGa--UGUgGCGCUU------------GAUGGCGCG-C-CCG- -5'
24115 5' -56.8 NC_005263.2 + 6682 0.67 0.534644
Target:  5'- uGUU-CACCGCGAaccacaugaaguGCUugCG-GuCGGGCg -3'
miRNA:   3'- -CGAuGUGGCGCU------------UGAugGCgC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 41756 0.67 0.534644
Target:  5'- gGC-ACGgCGCGAucaACgaggagAUCgGCGCGGGCg -3'
miRNA:   3'- -CGaUGUgGCGCU---UGa-----UGG-CGCGCCCG- -5'
24115 5' -56.8 NC_005263.2 + 43500 0.67 0.534644
Target:  5'- --gGCACCuCGaAGCUGCCG-GCGcGGCc -3'
miRNA:   3'- cgaUGUGGcGC-UUGAUGGCgCGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 37633 0.67 0.534644
Target:  5'- cCUGCGCgGCGAcCUGCUuguauGgGaCGGGCa -3'
miRNA:   3'- cGAUGUGgCGCUuGAUGG-----CgC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 43596 0.67 0.534644
Target:  5'- gGCUACGaCGCGGAag-UCGCGaUGGGCc -3'
miRNA:   3'- -CGAUGUgGCGCUUgauGGCGC-GCCCG- -5'
24115 5' -56.8 NC_005263.2 + 24007 0.67 0.534644
Target:  5'- --gGCGCCGCGcugcaAAgUGCCGaCGCGcucGGCa -3'
miRNA:   3'- cgaUGUGGCGC-----UUgAUGGC-GCGC---CCG- -5'
24115 5' -56.8 NC_005263.2 + 21584 0.67 0.528326
Target:  5'- uGCU-CGCCGCcGGCgucgacGCCGCGCGcaacaguuacaucaaGGCg -3'
miRNA:   3'- -CGAuGUGGCGcUUGa-----UGGCGCGC---------------CCG- -5'
24115 5' -56.8 NC_005263.2 + 33896 0.67 0.524129
Target:  5'- cGUUGCG-CGCGAACggcacGCCGuCGCGGa- -3'
miRNA:   3'- -CGAUGUgGCGCUUGa----UGGC-GCGCCcg -5'
24115 5' -56.8 NC_005263.2 + 13663 0.67 0.524129
Target:  5'- uGC-GCACCGCGucGCgaaUGCGCaGGCg -3'
miRNA:   3'- -CGaUGUGGCGCu-UGaugGCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 711 0.68 0.513695
Target:  5'- cGCcGC-CCGCGAGC-GCCGUgGCGaGGUu -3'
miRNA:   3'- -CGaUGuGGCGCUUGaUGGCG-CGC-CCG- -5'
24115 5' -56.8 NC_005263.2 + 44649 0.68 0.513695
Target:  5'- cGCUACAUgGUcaAGCUGCaCGCGCaGGUc -3'
miRNA:   3'- -CGAUGUGgCGc-UUGAUG-GCGCGcCCG- -5'
24115 5' -56.8 NC_005263.2 + 43231 0.68 0.513695
Target:  5'- cGCUACAUgGUGAGCgGCgGCaGCGG-Ca -3'
miRNA:   3'- -CGAUGUGgCGCUUGaUGgCG-CGCCcG- -5'
24115 5' -56.8 NC_005263.2 + 17575 0.68 0.513695
Target:  5'- aGCaGCGCauCGAGCUGCuCGCGCagcgGGGUc -3'
miRNA:   3'- -CGaUGUGgcGCUUGAUG-GCGCG----CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.