miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 20346 0.67 0.412383
Target:  5'- uGCCGccGCAccucgggGGCGCGcAUGGcugAUCGCGCGc -3'
miRNA:   3'- gCGGC--CGU-------UCGCGC-UACU---UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 43036 0.67 0.404185
Target:  5'- gGuuGGCAccugacgcGGCGCGAcaaUGGcCCGCGUu -3'
miRNA:   3'- gCggCCGU--------UCGCGCU---ACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 32879 0.67 0.404185
Target:  5'- uGCCGGCGGGCGgCGA-GuuUCGUgGCGu -3'
miRNA:   3'- gCGGCCGUUCGC-GCUaCuuGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 19676 0.67 0.404185
Target:  5'- gGCCGGUgAAGCucaGCGAUGuGCUGaaaGCGa -3'
miRNA:   3'- gCGGCCG-UUCG---CGCUACuUGGCg--CGC- -5'
24116 3' -59.1 NC_005263.2 + 32571 0.67 0.403281
Target:  5'- uCGCCGaGguucaggacaaCGAGCGCGAUGAgcacaucGCCGaGCGu -3'
miRNA:   3'- -GCGGC-C-----------GUUCGCGCUACU-------UGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 13754 0.67 0.403281
Target:  5'- uGCCGGUuuacacggcgacAGGCGCGucgcuuaAUGGGCCGCauGCu -3'
miRNA:   3'- gCGGCCG------------UUCGCGC-------UACUUGGCG--CGc -5'
24116 3' -59.1 NC_005263.2 + 31542 0.68 0.395199
Target:  5'- cCGCCGGCcuuGGCGuCGcUGcccaGGCgGCGCGc -3'
miRNA:   3'- -GCGGCCGu--UCGC-GCuAC----UUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20002 0.68 0.395199
Target:  5'- uGCCGuCAAcGaCGCGAUcGGCCGCGCc -3'
miRNA:   3'- gCGGCcGUU-C-GCGCUAcUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12555 0.68 0.394307
Target:  5'- gGCCGGCGgcgccguAGCGCccgc--CCGCGCGc -3'
miRNA:   3'- gCGGCCGU-------UCGCGcuacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 37915 0.68 0.394307
Target:  5'- gGCCGGCGAGgcuucggccugcuCGCGAU---UCGCGCu -3'
miRNA:   3'- gCGGCCGUUC-------------GCGCUAcuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 33458 0.68 0.394307
Target:  5'- gCGCUGGCAacucggucAGCGUGAUcacGAGCCcuucgucGCGCc -3'
miRNA:   3'- -GCGGCCGU--------UCGCGCUA---CUUGG-------CGCGc -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47212 0.68 0.386342
Target:  5'- cCGCCGGCG---GCGAcc-GCCGCGCu -3'
miRNA:   3'- -GCGGCCGUucgCGCUacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 14102 0.68 0.386342
Target:  5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3'
miRNA:   3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 31341 0.68 0.384586
Target:  5'- aCGCCGGCGgccgucaGGCGCGAcuccauaaagcccUGcuGCUGCGgGc -3'
miRNA:   3'- -GCGGCCGU-------UCGCGCU-------------ACu-UGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 750 0.68 0.383711
Target:  5'- gCGCCGcccauuucggcgacGCGcAGCGCGAUGuacGACUGCGgGu -3'
miRNA:   3'- -GCGGC--------------CGU-UCGCGCUAC---UUGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 20206 0.68 0.377618
Target:  5'- cCGCCGuCGAGUGCuuUGcccGACUGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGCGcuAC---UUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.