miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 17639 0.67 0.441387
Target:  5'- gCGCCGGauguGGCgcaacGCGAaGGccGCCGCGCu -3'
miRNA:   3'- -GCGGCCgu--UCG-----CGCUaCU--UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 694 0.67 0.441387
Target:  5'- uGCCGaGCGcGC-CGAUGAACuCGaCGCa -3'
miRNA:   3'- gCGGC-CGUuCGcGCUACUUG-GC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 41752 0.67 0.441387
Target:  5'- gGgCGGCAcGGCGCGAUcaacgaggaGAuCgGCGCGg -3'
miRNA:   3'- gCgGCCGU-UCGCGCUA---------CUuGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 13362 0.67 0.441387
Target:  5'- uGCgGGC-GGCGCGA--AACaCGCGCc -3'
miRNA:   3'- gCGgCCGuUCGCGCUacUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 22322 0.67 0.431903
Target:  5'- uGCCGGCAcgcucAGCGCGcgG-GCUGCu-- -3'
miRNA:   3'- gCGGCCGU-----UCGCGCuaCuUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 46977 0.67 0.431903
Target:  5'- aCGCCGuGCGcagcacGGCGCGGacu-UCGCGCGc -3'
miRNA:   3'- -GCGGC-CGU------UCGCGCUacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1418 0.67 0.431903
Target:  5'- uCGUCGGCGcGCGCcgccuuGGCUGCGCGc -3'
miRNA:   3'- -GCGGCCGUuCGCGcuac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47242 0.67 0.42254
Target:  5'- gCGCCGGCcGGCaCGAcgGGuacgcuguCCGCGCu -3'
miRNA:   3'- -GCGGCCGuUCGcGCUa-CUu-------GGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30919 0.67 0.42254
Target:  5'- aGCgCGGCGAcggcguacGCGCGA---GCUGCGCa -3'
miRNA:   3'- gCG-GCCGUU--------CGCGCUacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 23570 0.67 0.42254
Target:  5'- aGCCGGCAGGCaCGA---ACC-CGCa -3'
miRNA:   3'- gCGGCCGUUCGcGCUacuUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 2655 0.67 0.42254
Target:  5'- gCGCCGggcucgagguGCAGGCGUGcguuGUGGuagcugAUCGCGCGg -3'
miRNA:   3'- -GCGGC----------CGUUCGCGC----UACU------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 3002 0.67 0.4133
Target:  5'- uCGCCGGCGcauccGcCGCGAcGuAgCGCGCGa -3'
miRNA:   3'- -GCGGCCGUu----C-GCGCUaCuUgGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23259 0.67 0.4133
Target:  5'- cCGCCGGCuGGCGCaccgGcACCGC-CGu -3'
miRNA:   3'- -GCGGCCGuUCGCGcua-CuUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 13006 0.67 0.4133
Target:  5'- gGCCGGUcGGCGUGAU--GCCGaguaGCu -3'
miRNA:   3'- gCGGCCGuUCGCGCUAcuUGGCg---CGc -5'
24116 3' -59.1 NC_005263.2 + 44165 0.67 0.4133
Target:  5'- uCGCUGGCuGGCGCGugcGAGgCGCuaGg -3'
miRNA:   3'- -GCGGCCGuUCGCGCua-CUUgGCGcgC- -5'
24116 3' -59.1 NC_005263.2 + 38264 0.67 0.4133
Target:  5'- aGUCGaGCAAGCGC-----GCCGCGCc -3'
miRNA:   3'- gCGGC-CGUUCGCGcuacuUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.