miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 27226 0.66 0.470524
Target:  5'- cCGCCGcucGUGAGCGUGAUcGcGCCGC-CGg -3'
miRNA:   3'- -GCGGC---CGUUCGCGCUA-CuUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 13554 0.66 0.470524
Target:  5'- gGCaCGGUguacGGGCGCGGcacGAGCgGCGUGu -3'
miRNA:   3'- gCG-GCCG----UUCGCGCUa--CUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10183 0.66 0.470524
Target:  5'- uGCCGGC-GGCGCGc----CUGCGCc -3'
miRNA:   3'- gCGGCCGuUCGCGCuacuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46232 0.66 0.470524
Target:  5'- cCGCCaauccgGGcCAGGCGCGccaGAACCGCaCGu -3'
miRNA:   3'- -GCGG------CC-GUUCGCGCua-CUUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 40923 0.66 0.470524
Target:  5'- aGCCgcacauacccgGGUAucgcAGCgGCGAUG-GCCGCGCa -3'
miRNA:   3'- gCGG-----------CCGU----UCG-CGCUACuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 33951 0.66 0.470524
Target:  5'- cCGCCGGCccgAAGuCGCcaagGcGGCCGCGCu -3'
miRNA:   3'- -GCGGCCG---UUC-GCGcua-C-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8824 0.66 0.470524
Target:  5'- uGCCGGCcgcucggcGUGCGAUcaaGcAUCGCGCGc -3'
miRNA:   3'- gCGGCCGuu------CGCGCUA---CuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1224 0.66 0.470524
Target:  5'- gCGCaucggGGaCGAGCGCGAUGucauccGGCCaggauGCGCGa -3'
miRNA:   3'- -GCGg----CC-GUUCGCGCUAC------UUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 5864 0.66 0.470524
Target:  5'- uGCU-GCAAGCGCGGUcGAugCGCa-- -3'
miRNA:   3'- gCGGcCGUUCGCGCUA-CUugGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 12337 0.66 0.464617
Target:  5'- uCGCCGGCGuggccgguuuccucaAGCGUcucGcGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---------------UCGCGcuaCuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12664 0.66 0.460701
Target:  5'- uCGUCGGCcGGCGCGccgGggUCGUcguucGCGu -3'
miRNA:   3'- -GCGGCCGuUCGCGCua-CuuGGCG-----CGC- -5'
24116 3' -59.1 NC_005263.2 + 23913 0.66 0.460701
Target:  5'- gCGCCcGCGAGCGUGAccgucgcuuUGGcgGCuUGCGCGu -3'
miRNA:   3'- -GCGGcCGUUCGCGCU---------ACU--UG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30076 0.66 0.460701
Target:  5'- aGCCGGCGAGUuuGUcgauGGUGGACaUGCGUu -3'
miRNA:   3'- gCGGCCGUUCG--CG----CUACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8386 0.66 0.460701
Target:  5'- gCGCaGGCAGGC-CGAccagGAAgCGCGCc -3'
miRNA:   3'- -GCGgCCGUUCGcGCUa---CUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 41051 0.66 0.460701
Target:  5'- gCGCUcGCAccugccauuGGCGCGAUGcGCCauccgucggcGCGCGa -3'
miRNA:   3'- -GCGGcCGU---------UCGCGCUACuUGG----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29558 0.67 0.450987
Target:  5'- uGCCGGgcuGCGCGAacuucuUGAACgCGCucGCGg -3'
miRNA:   3'- gCGGCCguuCGCGCU------ACUUG-GCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 41549 0.67 0.450987
Target:  5'- aCGCgCGGCGcgccguGGCgGCGAUGcgagcuuUCGCGCGu -3'
miRNA:   3'- -GCG-GCCGU------UCG-CGCUACuu-----GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19820 0.67 0.450987
Target:  5'- gGCCGGUAcuGCacaaGGUGAGUCGCGCGc -3'
miRNA:   3'- gCGGCCGUu-CGcg--CUACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21237 0.67 0.450987
Target:  5'- aGCCGuCAccGGCGaCGAaGuAGCCGCGCa -3'
miRNA:   3'- gCGGCcGU--UCGC-GCUaC-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 694 0.67 0.441387
Target:  5'- uGCCGaGCGcGC-CGAUGAACuCGaCGCa -3'
miRNA:   3'- gCGGC-CGUuCGcGCUACUUG-GC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.