miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 21329 0.71 0.224198
Target:  5'- aCGCCGucggucugauguucGCGAGCGCGcugaAUGAACgUGCGCa -3'
miRNA:   3'- -GCGGC--------------CGUUCGCGC----UACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 44580 0.72 0.209054
Target:  5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 37443 0.74 0.152049
Target:  5'- aCGUCGGCGcGCGCGGU---CUGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCUAcuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 9492 0.77 0.089131
Target:  5'- gCGCCGGCGcuauccaucgcguGCGCGGgcUGAAUCGUGCGg -3'
miRNA:   3'- -GCGGCCGUu------------CGCGCU--ACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42851 0.7 0.261847
Target:  5'- uGCCGGCAccgcccgcugaugacGGCGCc-UGAucgcgucaauggcguGCCGCGCGc -3'
miRNA:   3'- gCGGCCGU---------------UCGCGcuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 689 0.72 0.203674
Target:  5'- uGCuCGGUGAGCGCGAUcguGCCGcCGCc -3'
miRNA:   3'- gCG-GCCGUUCGCGCUAcu-UGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 39300 0.77 0.087646
Target:  5'- gGCCGGCAGGCGC-AUGcg-CGCGCGa -3'
miRNA:   3'- gCGGCCGUUCGCGcUACuugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12704 0.71 0.243961
Target:  5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3'
miRNA:   3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 11073 0.77 0.087646
Target:  5'- aGCaCGGCAaaAGCGUggGAUGAcGCCGCGCGu -3'
miRNA:   3'- gCG-GCCGU--UCGCG--CUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19171 0.72 0.203674
Target:  5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3'
miRNA:   3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1941 0.72 0.193272
Target:  5'- gCGCCGGCAccGGCGaCGccGGcaACCGCGuCGa -3'
miRNA:   3'- -GCGGCCGU--UCGC-GCuaCU--UGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 30265 0.74 0.160458
Target:  5'- uCGUCGGCgAAGCGCugcgcaaucGGGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG-UUCGCGcua------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1369 0.75 0.128821
Target:  5'- uGCCGGCGgcggccuugaacgAGCGC-AUGaAGCCGCGCu -3'
miRNA:   3'- gCGGCCGU-------------UCGCGcUAC-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42012 0.77 0.092689
Target:  5'- uGCCGGCA-GUGCGGccGGCCGCGCc -3'
miRNA:   3'- gCGGCCGUuCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30370 0.7 0.276637
Target:  5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3'
miRNA:   3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 31612 0.7 0.263164
Target:  5'- uGCCGGU---CGCGAc-GGCCGCGCGg -3'
miRNA:   3'- gCGGCCGuucGCGCUacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1856 0.71 0.25663
Target:  5'- gGCCGGCGAcGUGCGGUucuGgCGCGCc -3'
miRNA:   3'- gCGGCCGUU-CGCGCUAcu-UgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 2960 0.71 0.250229
Target:  5'- aGCUGcGCGAGCGUGAUGc-CCGUcaGCGg -3'
miRNA:   3'- gCGGC-CGUUCGCGCUACuuGGCG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.