Results 1 - 20 of 205 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 44778 | 0.81 | 0.048332 |
Target: 5'- gCGCCGGC-GGCGCGcagacguUGAacACCGCGCGg -3' miRNA: 3'- -GCGGCCGuUCGCGCu------ACU--UGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 689 | 0.72 | 0.203674 |
Target: 5'- uGCuCGGUGAGCGCGAUcguGCCGcCGCc -3' miRNA: 3'- gCG-GCCGUUCGCGCUAcu-UGGC-GCGc -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 44580 | 0.72 | 0.209054 |
Target: 5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3' miRNA: 3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 46912 | 0.66 | 0.500609 |
Target: 5'- aCGCCGG-AAGaaCGCGcu--GCCGCGCa -3' miRNA: 3'- -GCGGCCgUUC--GCGCuacuUGGCGCGc -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 42012 | 0.77 | 0.092689 |
Target: 5'- uGCCGGCA-GUGCGGccGGCCGCGCc -3' miRNA: 3'- gCGGCCGUuCGCGCUacUUGGCGCGc -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 41354 | 0.76 | 0.103611 |
Target: 5'- uCGcCCGGC--GCGCGAUGGACgugaCGCGCGa -3' miRNA: 3'- -GC-GGCCGuuCGCGCUACUUG----GCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 1369 | 0.75 | 0.128821 |
Target: 5'- uGCCGGCGgcggccuugaacgAGCGC-AUGaAGCCGCGCu -3' miRNA: 3'- gCGGCCGU-------------UCGCGcUAC-UUGGCGCGc -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 33964 | 0.75 | 0.136422 |
Target: 5'- gGCCGGCGAGUguGCGgcGAAUCGUaGCGg -3' miRNA: 3'- gCGGCCGUUCG--CGCuaCUUGGCG-CGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 30265 | 0.74 | 0.160458 |
Target: 5'- uCGUCGGCgAAGCGCugcgcaaucGGGCCGCGCGc -3' miRNA: 3'- -GCGGCCG-UUCGCGcua------CUUGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 18702 | 0.72 | 0.198413 |
Target: 5'- gGCgCGGCAGGCGCGGgcgGcAACCcuuuccuguaaGCGCGu -3' miRNA: 3'- gCG-GCCGUUCGCGCUa--C-UUGG-----------CGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 29323 | 0.73 | 0.173858 |
Target: 5'- gCGCgCGGCGAGCaCGAU-AACCaGCGCGa -3' miRNA: 3'- -GCG-GCCGUUCGcGCUAcUUGG-CGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 37443 | 0.74 | 0.152049 |
Target: 5'- aCGUCGGCGcGCGCGGU---CUGCGCGg -3' miRNA: 3'- -GCGGCCGUuCGCGCUAcuuGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 11073 | 0.77 | 0.087646 |
Target: 5'- aGCaCGGCAaaAGCGUggGAUGAcGCCGCGCGu -3' miRNA: 3'- gCG-GCCGU--UCGCG--CUACU-UGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 1941 | 0.72 | 0.193272 |
Target: 5'- gCGCCGGCAccGGCGaCGccGGcaACCGCGuCGa -3' miRNA: 3'- -GCGGCCGU--UCGC-GCuaCU--UGGCGC-GC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 39300 | 0.77 | 0.087646 |
Target: 5'- gGCCGGCAGGCGC-AUGcg-CGCGCGa -3' miRNA: 3'- gCGGCCGUUCGCGcUACuugGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 5196 | 0.74 | 0.147996 |
Target: 5'- uCGCCuGCAGGCGCGgcGucgcuACCGuCGCGa -3' miRNA: 3'- -GCGGcCGUUCGCGCuaCu----UGGC-GCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 20417 | 0.72 | 0.193272 |
Target: 5'- cCGCCGGCGccGGCGCGcacaaGAaggcgGCCGUGCu -3' miRNA: 3'- -GCGGCCGU--UCGCGCua---CU-----UGGCGCGc -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 19171 | 0.72 | 0.203674 |
Target: 5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3' miRNA: 3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 9492 | 0.77 | 0.089131 |
Target: 5'- gCGCCGGCGcuauccaucgcguGCGCGGgcUGAAUCGUGCGg -3' miRNA: 3'- -GCGGCCGUu------------CGCGCU--ACUUGGCGCGC- -5' |
|||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 20723 | 0.75 | 0.122283 |
Target: 5'- aGCCGGUcAGCGCGccGGccgccGCCGCGCc -3' miRNA: 3'- gCGGCCGuUCGCGCuaCU-----UGGCGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home