miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 689 0.72 0.203674
Target:  5'- uGCuCGGUGAGCGCGAUcguGCCGcCGCc -3'
miRNA:   3'- gCG-GCCGUUCGCGCUAcu-UGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 694 0.67 0.441387
Target:  5'- uGCCGaGCGcGC-CGAUGAACuCGaCGCa -3'
miRNA:   3'- gCGGC-CGUuCGcGCUACUUG-GC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 750 0.68 0.383711
Target:  5'- gCGCCGcccauuucggcgacGCGcAGCGCGAUGuacGACUGCGgGu -3'
miRNA:   3'- -GCGGC--------------CGU-UCGCGCUAC---UUGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 881 0.73 0.183338
Target:  5'- gGCCGGCGcuucguucAGCGCGgcGGucGCCGCcgGCGg -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU--UGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 1224 0.66 0.470524
Target:  5'- gCGCaucggGGaCGAGCGCGAUGucauccGGCCaggauGCGCGa -3'
miRNA:   3'- -GCGg----CC-GUUCGCGCUAC------UUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1282 0.68 0.35225
Target:  5'- aGUCGGagcGGCGCGAaaGAUCGCGCu -3'
miRNA:   3'- gCGGCCgu-UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1369 0.75 0.128821
Target:  5'- uGCCGGCGgcggccuugaacgAGCGC-AUGaAGCCGCGCu -3'
miRNA:   3'- gCGGCCGU-------------UCGCGcUAC-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1418 0.67 0.431903
Target:  5'- uCGUCGGCGcGCGCcgccuuGGCUGCGCGc -3'
miRNA:   3'- -GCGGCCGUuCGCGcuac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1638 0.71 0.231222
Target:  5'- uCGUCGGC-GGCGUagcccugGAUGcGCUGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCGCG-------CUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1856 0.71 0.25663
Target:  5'- gGCCGGCGAcGUGCGGUucuGgCGCGCc -3'
miRNA:   3'- gCGGCCGUU-CGCGCUAcu-UgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1941 0.72 0.193272
Target:  5'- gCGCCGGCAccGGCGaCGccGGcaACCGCGuCGa -3'
miRNA:   3'- -GCGGCCGU--UCGC-GCuaCU--UGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 2308 0.7 0.290655
Target:  5'- gGCCGGCAcGCccGCGuUGAACUG-GCGg -3'
miRNA:   3'- gCGGCCGUuCG--CGCuACUUGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 2447 0.66 0.490483
Target:  5'- gGCgCGGCAAacacuuGCGCGccGAacgaaGCCGCGUu -3'
miRNA:   3'- gCG-GCCGUU------CGCGCuaCU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 2655 0.67 0.42254
Target:  5'- gCGCCGggcucgagguGCAGGCGUGcguuGUGGuagcugAUCGCGCGg -3'
miRNA:   3'- -GCGGC----------CGUUCGCGC----UACU------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2703 0.7 0.290655
Target:  5'- cCGCuCGGCAGGUGC-AUGcGCagCGCGCGu -3'
miRNA:   3'- -GCG-GCCGUUCGCGcUACuUG--GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2960 0.71 0.250229
Target:  5'- aGCUGcGCGAGCGUGAUGc-CCGUcaGCGg -3'
miRNA:   3'- gCGGC-CGUUCGCGCUACuuGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 3002 0.67 0.4133
Target:  5'- uCGCCGGCGcauccGcCGCGAcGuAgCGCGCGa -3'
miRNA:   3'- -GCGGCCGUu----C-GCGCUaCuUgGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3200 0.76 0.106525
Target:  5'- gCGUCGGCGAGCGCGGccaGGAUCGgGCc -3'
miRNA:   3'- -GCGGCCGUUCGCGCUa--CUUGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 3208 0.7 0.29787
Target:  5'- aGCCGGCccGGCGCGccgcccgccccgAUGAcGCCGgGCa -3'
miRNA:   3'- gCGGCCGu-UCGCGC------------UACU-UGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 3240 0.73 0.183338
Target:  5'- aCGacaGGUAGGCGCGAUc-GCCGCGCa -3'
miRNA:   3'- -GCgg-CCGUUCGCGCUAcuUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.