miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 3308 0.71 0.237217
Target:  5'- gCGCgCGGCGGcGCGCGGUuGAAuuaaacuaucgcuUCGCGCGa -3'
miRNA:   3'- -GCG-GCCGUU-CGCGCUA-CUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3344 0.7 0.283578
Target:  5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3'
miRNA:   3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 5196 0.74 0.147996
Target:  5'- uCGCCuGCAGGCGCGgcGucgcuACCGuCGCGa -3'
miRNA:   3'- -GCGGcCGUUCGCGCuaCu----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 5544 0.69 0.303742
Target:  5'- gGCCGGCAacggccuGGCGCGAaUGcaGACCGUucagcucgauuguGCGg -3'
miRNA:   3'- gCGGCCGU-------UCGCGCU-AC--UUGGCG-------------CGC- -5'
24116 3' -59.1 NC_005263.2 + 5846 0.66 0.499592
Target:  5'- uGUCGGCcgucGUGCGGUcgaagucGAGCCGCagGCGg -3'
miRNA:   3'- gCGGCCGuu--CGCGCUA-------CUUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 5864 0.66 0.470524
Target:  5'- uGCU-GCAAGCGCGGUcGAugCGCa-- -3'
miRNA:   3'- gCGGcCGUUCGCGCUA-CUugGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 6462 0.73 0.173858
Target:  5'- aGCaCGaGCGAGCGCG-UGGGCCGCaGUGc -3'
miRNA:   3'- gCG-GC-CGUUCGCGCuACUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 7057 0.68 0.377618
Target:  5'- gCGCCaauGGCAGGUGCGAgc-GCUGCGa- -3'
miRNA:   3'- -GCGG---CCGUUCGCGCUacuUGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 8035 0.69 0.344067
Target:  5'- uGCgaGGCGuccGCGCcGUGGcGCCGCGCGa -3'
miRNA:   3'- gCGg-CCGUu--CGCGcUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8258 0.68 0.377618
Target:  5'- aGCCGGguAuGCGCGuucgGAcgGCCacaGCGCGa -3'
miRNA:   3'- gCGGCCguU-CGCGCua--CU--UGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8386 0.66 0.460701
Target:  5'- gCGCaGGCAGGC-CGAccagGAAgCGCGCc -3'
miRNA:   3'- -GCGgCCGUUCGcGCUa---CUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8536 0.71 0.25663
Target:  5'- uCGUCGGCucGGCgGUGAUGAauGCCGCGa- -3'
miRNA:   3'- -GCGGCCGu-UCG-CGCUACU--UGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 8738 0.69 0.305223
Target:  5'- -cUCGGCGAGCGgGGUcGAgacguuuuuaacGCUGCGCGg -3'
miRNA:   3'- gcGGCCGUUCGCgCUA-CU------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8784 0.7 0.263164
Target:  5'- aCGCCGGCccGCGCGAgguucUGAAUacguUGUGCGu -3'
miRNA:   3'- -GCGGCCGuuCGCGCU-----ACUUG----GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8824 0.66 0.470524
Target:  5'- uGCCGGCcgcucggcGUGCGAUcaaGcAUCGCGCGc -3'
miRNA:   3'- gCGGCCGuu------CGCGCUA---CuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 9370 0.69 0.328114
Target:  5'- gCGCCGGC-GGCuGCGG-GAAUuucaGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCG-CGCUaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 9492 0.77 0.089131
Target:  5'- gCGCCGGCGcuauccaucgcguGCGCGGgcUGAAUCGUGCGg -3'
miRNA:   3'- -GCGGCCGUu------------CGCGCU--ACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10183 0.66 0.470524
Target:  5'- uGCCGGC-GGCGCGc----CUGCGCc -3'
miRNA:   3'- gCGGCCGuUCGCGCuacuuGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.