miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 37443 0.74 0.152049
Target:  5'- aCGUCGGCGcGCGCGGU---CUGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCUAcuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41224 0.74 0.156202
Target:  5'- uGCCGGCAAGCccuCGAUGGacaauGCCGuCGCc -3'
miRNA:   3'- gCGGCCGUUCGc--GCUACU-----UGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 10401 0.74 0.156202
Target:  5'- gGCCGGCGAGCG-GGUccGgCGCGCGu -3'
miRNA:   3'- gCGGCCGUUCGCgCUAcuUgGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 36566 0.74 0.156202
Target:  5'- aGCgCGGCAAgGUGaCGAcGAACCGCGCc -3'
miRNA:   3'- gCG-GCCGUU-CGC-GCUaCUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30265 0.74 0.160458
Target:  5'- uCGUCGGCgAAGCGCugcgcaaucGGGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG-UUCGCGcua------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 15695 0.73 0.166591
Target:  5'- gGCCGGCGAGCucgcagcgacuacggGCGGUucGACCaGCGCGg -3'
miRNA:   3'- gCGGCCGUUCG---------------CGCUAc-UUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 26317 0.73 0.169284
Target:  5'- uCGCgGGCGAuGCGCGAgUGAuUCGCGCc -3'
miRNA:   3'- -GCGgCCGUU-CGCGCU-ACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29323 0.73 0.173858
Target:  5'- gCGCgCGGCGAGCaCGAU-AACCaGCGCGa -3'
miRNA:   3'- -GCG-GCCGUUCGcGCUAcUUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16427 0.73 0.173858
Target:  5'- gCGUCGGCGcuGGCGCGgcGGGCCuCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuaCUUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 6462 0.73 0.173858
Target:  5'- aGCaCGaGCGAGCGCG-UGGGCCGCaGUGc -3'
miRNA:   3'- gCG-GC-CGUUCGCGCuACUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 39691 0.73 0.173858
Target:  5'- aCGCgauggGGCGAGCGCGAgcugGAaaugGCCGgCGCGg -3'
miRNA:   3'- -GCGg----CCGUUCGCGCUa---CU----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 36680 0.73 0.178069
Target:  5'- -cCUGGCAgcauucgAGCGCGGgcaagGAGCCGCGCc -3'
miRNA:   3'- gcGGCCGU-------UCGCGCUa----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 34022 0.73 0.178542
Target:  5'- aGCCGGUAccAGC-CGAcaUGGGCCGgCGCGg -3'
miRNA:   3'- gCGGCCGU--UCGcGCU--ACUUGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 3240 0.73 0.183338
Target:  5'- aCGacaGGUAGGCGCGAUc-GCCGCGCa -3'
miRNA:   3'- -GCgg-CCGUUCGCGCUAcuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 881 0.73 0.183338
Target:  5'- gGCCGGCGcuucguucAGCGCGgcGGucGCCGCcgGCGg -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU--UGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 20131 0.73 0.188247
Target:  5'- --aCGGCAAGCGCGAcGGuacgGCCGuCGCGc -3'
miRNA:   3'- gcgGCCGUUCGCGCUaCU----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 20417 0.72 0.193272
Target:  5'- cCGCCGGCGccGGCGCGcacaaGAaggcgGCCGUGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCua---CU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1941 0.72 0.193272
Target:  5'- gCGCCGGCAccGGCGaCGccGGcaACCGCGuCGa -3'
miRNA:   3'- -GCGGCCGU--UCGC-GCuaCU--UGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 18702 0.72 0.198413
Target:  5'- gGCgCGGCAGGCGCGGgcgGcAACCcuuuccuguaaGCGCGu -3'
miRNA:   3'- gCG-GCCGUUCGCGCUa--C-UUGG-----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34894 0.72 0.203674
Target:  5'- gCGCaGGCGcucacgccuGGCGCGAaugucgaccugUGAugCGCGCGg -3'
miRNA:   3'- -GCGgCCGU---------UCGCGCU-----------ACUugGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.