miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 45470 1.1 0.000338
Target:  5'- aCGCCGGCAAGCGCGAUGAACCGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGCUACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 44778 0.81 0.048332
Target:  5'- gCGCCGGC-GGCGCGcagacguUGAacACCGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCGCGCu------ACU--UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 18908 0.8 0.055751
Target:  5'- gCGCCGGCcuGCGuCGAgcguGACCGCGCGg -3'
miRNA:   3'- -GCGGCCGuuCGC-GCUac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 39300 0.77 0.087646
Target:  5'- gGCCGGCAGGCGC-AUGcg-CGCGCGa -3'
miRNA:   3'- gCGGCCGUUCGCGcUACuugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 11073 0.77 0.087646
Target:  5'- aGCaCGGCAaaAGCGUggGAUGAcGCCGCGCGu -3'
miRNA:   3'- gCG-GCCGU--UCGCG--CUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17752 0.77 0.087646
Target:  5'- gCGCCGGCGgcAGCGCG----GCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 9492 0.77 0.089131
Target:  5'- gCGCCGGCGcuauccaucgcguGCGCGGgcUGAAUCGUGCGg -3'
miRNA:   3'- -GCGGCCGUu------------CGCGCU--ACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42012 0.77 0.092689
Target:  5'- uGCCGGCA-GUGCGGccGGCCGCGCc -3'
miRNA:   3'- gCGGCCGUuCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28420 0.77 0.095312
Target:  5'- gCGCCGGCAcGCGCG-UGAACgucgcgggcaGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCuACUUGg---------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41354 0.76 0.103611
Target:  5'- uCGcCCGGC--GCGCGAUGGACgugaCGCGCGa -3'
miRNA:   3'- -GC-GGCCGuuCGCGCUACUUG----GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3200 0.76 0.106525
Target:  5'- gCGUCGGCGAGCGCGGccaGGAUCGgGCc -3'
miRNA:   3'- -GCGGCCGUUCGCGCUa--CUUGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 18430 0.76 0.117018
Target:  5'- uCGUCGGCGAugaaccgcucgagguGCGCG-UGAagcaGCCGCGCGg -3'
miRNA:   3'- -GCGGCCGUU---------------CGCGCuACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38552 0.75 0.118967
Target:  5'- cCGCCuGGCAAGcCGCGAgc-GCCGCGuCGg -3'
miRNA:   3'- -GCGG-CCGUUC-GCGCUacuUGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 20723 0.75 0.122283
Target:  5'- aGCCGGUcAGCGCGccGGccgccGCCGCGCc -3'
miRNA:   3'- gCGGCCGuUCGCGCuaCU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1369 0.75 0.128821
Target:  5'- uGCCGGCGgcggccuugaacgAGCGC-AUGaAGCCGCGCu -3'
miRNA:   3'- gCGGCCGU-------------UCGCGcUAC-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 22117 0.75 0.128821
Target:  5'- cCGCCGGCAcgcugcaAGCGCGAUcgccGGACgGgGCGc -3'
miRNA:   3'- -GCGGCCGU-------UCGCGCUA----CUUGgCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 33964 0.75 0.136422
Target:  5'- gGCCGGCGAGUguGCGgcGAAUCGUaGCGg -3'
miRNA:   3'- gCGGCCGUUCG--CGCuaCUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 24689 0.75 0.136422
Target:  5'- gCGCCGGUAacggcGGCGCGccGAacguGCCGgGCGg -3'
miRNA:   3'- -GCGGCCGU-----UCGCGCuaCU----UGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 27114 0.74 0.140184
Target:  5'- aCGCCGGCAcgucgacgcgcaGGCGCGc--AGCCGCGuCGg -3'
miRNA:   3'- -GCGGCCGU------------UCGCGCuacUUGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 5196 0.74 0.147996
Target:  5'- uCGCCuGCAGGCGCGgcGucgcuACCGuCGCGa -3'
miRNA:   3'- -GCGGcCGUUCGCGCuaCu----UGGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.