miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 27887 0.65 0.507752
Target:  5'- gGCCGGC-GGCGCGcagucgGGcaaagcacucgacgGCgGCGCGu -3'
miRNA:   3'- gCGGCCGuUCGCGCua----CU--------------UGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8824 0.66 0.470524
Target:  5'- uGCCGGCcgcucggcGUGCGAUcaaGcAUCGCGCGc -3'
miRNA:   3'- gCGGCCGuu------CGCGCUA---CuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1224 0.66 0.470524
Target:  5'- gCGCaucggGGaCGAGCGCGAUGucauccGGCCaggauGCGCGa -3'
miRNA:   3'- -GCGg----CC-GUUCGCGCUAC------UUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41051 0.66 0.460701
Target:  5'- gCGCUcGCAccugccauuGGCGCGAUGcGCCauccgucggcGCGCGa -3'
miRNA:   3'- -GCGGcCGU---------UCGCGCUACuUGG----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30076 0.66 0.460701
Target:  5'- aGCCGGCGAGUuuGUcgauGGUGGACaUGCGUu -3'
miRNA:   3'- gCGGCCGUUCG--CG----CUACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8386 0.66 0.460701
Target:  5'- gCGCaGGCAGGC-CGAccagGAAgCGCGCc -3'
miRNA:   3'- -GCGgCCGUUCGcGCUa---CUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 23913 0.66 0.460701
Target:  5'- gCGCCcGCGAGCGUGAccgucgcuuUGGcgGCuUGCGCGu -3'
miRNA:   3'- -GCGGcCGUUCGCGCU---------ACU--UG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12664 0.66 0.460701
Target:  5'- uCGUCGGCcGGCGCGccgGggUCGUcguucGCGu -3'
miRNA:   3'- -GCGGCCGuUCGCGCua-CuuGGCG-----CGC- -5'
24116 3' -59.1 NC_005263.2 + 12337 0.66 0.464617
Target:  5'- uCGCCGGCGuggccgguuuccucaAGCGUcucGcGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---------------UCGCGcuaCuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 33951 0.66 0.470524
Target:  5'- cCGCCGGCccgAAGuCGCcaagGcGGCCGCGCu -3'
miRNA:   3'- -GCGGCCG---UUC-GCGcua-C-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 40923 0.66 0.470524
Target:  5'- aGCCgcacauacccgGGUAucgcAGCgGCGAUG-GCCGCGCa -3'
miRNA:   3'- gCGG-----------CCGU----UCG-CGCUACuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46232 0.66 0.470524
Target:  5'- cCGCCaauccgGGcCAGGCGCGccaGAACCGCaCGu -3'
miRNA:   3'- -GCGG------CC-GUUCGCGCua-CUUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 30367 0.66 0.500609
Target:  5'- uCGUCGuGC-AGCGCuucGggGAugUGCGCGa -3'
miRNA:   3'- -GCGGC-CGuUCGCG---CuaCUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29788 0.66 0.500609
Target:  5'- cCGUCGGCGucguagauuuccGGCGCGuauugcGAugCaGCGCGc -3'
miRNA:   3'- -GCGGCCGU------------UCGCGCua----CUugG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38918 0.66 0.499592
Target:  5'- aGCCGGCGc-CGCGccGAGCucgacguCGCGCa -3'
miRNA:   3'- gCGGCCGUucGCGCuaCUUG-------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 5846 0.66 0.499592
Target:  5'- uGUCGGCcgucGUGCGGUcgaagucGAGCCGCagGCGg -3'
miRNA:   3'- gCGGCCGuu--CGCGCUA-------CUUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 26716 0.66 0.497561
Target:  5'- gGCCGGCcugcggcAGCGCGAagcgcaccaucacgUcGAGuuGCGCa -3'
miRNA:   3'- gCGGCCGu------UCGCGCU--------------A-CUUggCGCGc -5'
24116 3' -59.1 NC_005263.2 + 22465 0.66 0.490483
Target:  5'- --aCGGCAgcgacAGCGCGAUcAACUacgGCGCGa -3'
miRNA:   3'- gcgGCCGU-----UCGCGCUAcUUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38609 0.66 0.480453
Target:  5'- aGCCcGCGcaCGCGAUGGauagcGCCGgCGCGa -3'
miRNA:   3'- gCGGcCGUucGCGCUACU-----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 30428 0.66 0.480453
Target:  5'- gGUCGGUgcggucGAGCGCGAgcAGCgugaGCGCGg -3'
miRNA:   3'- gCGGCCG------UUCGCGCUacUUGg---CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.