miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 47466 0.68 0.363937
Target:  5'- gGCCGGCAcgucgcguAGCGUGgcGAccuacaccccagccgAUUGCGCGa -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47363 0.71 0.25663
Target:  5'- uCGCCgaaaugGGC-GGCGCGuucGAugCGCGCGa -3'
miRNA:   3'- -GCGG------CCGuUCGCGCua-CUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47242 0.67 0.42254
Target:  5'- gCGCCGGCcGGCaCGAcgGGuacgcuguCCGCGCu -3'
miRNA:   3'- -GCGGCCGuUCGcGCUa-CUu-------GGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 47212 0.68 0.386342
Target:  5'- cCGCCGGCG---GCGAcc-GCCGCGCu -3'
miRNA:   3'- -GCGGCCGUucgCGCUacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 47152 0.71 0.254696
Target:  5'- uGCCGGCAuugcauuccaugcaAGCGCauaGAGCgGCGCa -3'
miRNA:   3'- gCGGCCGU--------------UCGCGcuaCUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46977 0.67 0.431903
Target:  5'- aCGCCGuGCGcagcacGGCGCGGacu-UCGCGCGc -3'
miRNA:   3'- -GCGGC-CGU------UCGCGCUacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 46912 0.66 0.500609
Target:  5'- aCGCCGG-AAGaaCGCGcu--GCCGCGCa -3'
miRNA:   3'- -GCGGCCgUUC--GCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46700 0.7 0.290655
Target:  5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 46660 0.66 0.480453
Target:  5'- gCGCC-GCGAGCGCcgcGAAgccUCGCGCGc -3'
miRNA:   3'- -GCGGcCGUUCGCGcuaCUU---GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 46232 0.66 0.470524
Target:  5'- cCGCCaauccgGGcCAGGCGCGccaGAACCGCaCGu -3'
miRNA:   3'- -GCGG------CC-GUUCGCGCua-CUUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 46175 0.71 0.243961
Target:  5'- uCGCCGGUGccGGCGCGcucGUGcagaCGCGCGg -3'
miRNA:   3'- -GCGGCCGU--UCGCGC---UACuug-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45470 1.1 0.000338
Target:  5'- aCGCCGGCAAGCGCGAUGAACCGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGCUACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 45119 0.69 0.339223
Target:  5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3'
miRNA:   3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 44778 0.81 0.048332
Target:  5'- gCGCCGGC-GGCGCGcagacguUGAacACCGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCGCGCu------ACU--UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 44580 0.72 0.209054
Target:  5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 44165 0.67 0.4133
Target:  5'- uCGCUGGCuGGCGCGugcGAGgCGCuaGg -3'
miRNA:   3'- -GCGGCCGuUCGCGCua-CUUgGCGcgC- -5'
24116 3' -59.1 NC_005263.2 + 44020 0.71 0.237824
Target:  5'- cCGCuCGGCAAGgGUGgcGAcuucGCCGCGUu -3'
miRNA:   3'- -GCG-GCCGUUCgCGCuaCU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 43733 0.66 0.500609
Target:  5'- uCGCCGaccGCAuGCGCu---GACCGCGCa -3'
miRNA:   3'- -GCGGC---CGUuCGCGcuacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 43672 0.72 0.220184
Target:  5'- gGCCGGCGgacaacAGCGCGGauUGGGCCGgGa- -3'
miRNA:   3'- gCGGCCGU------UCGCGCU--ACUUGGCgCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.