miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 10283 0.7 0.283578
Target:  5'- gCGUCGGCGacaugAGCGCcg-GAugCGCGCc -3'
miRNA:   3'- -GCGGCCGU-----UCGCGcuaCUugGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 10401 0.74 0.156202
Target:  5'- gGCCGGCGAGCG-GGUccGgCGCGCGu -3'
miRNA:   3'- gCGGCCGUUCGCgCUAcuUgGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10661 0.72 0.214558
Target:  5'- aCGCCGcGCAGaccGCGCGcgccgacguAUGAcgacgaggacgGCCGCGCGa -3'
miRNA:   3'- -GCGGC-CGUU---CGCGC---------UACU-----------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10879 0.68 0.36057
Target:  5'- -cUCGGCAccGGCGCGcgucGUGAGCgGCGUa -3'
miRNA:   3'- gcGGCCGU--UCGCGC----UACUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 11073 0.77 0.087646
Target:  5'- aGCaCGGCAaaAGCGUggGAUGAcGCCGCGCGu -3'
miRNA:   3'- gCG-GCCGU--UCGCG--CUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 11464 0.66 0.490483
Target:  5'- aGCCGaGCucGCGCu----GCCGCGCa -3'
miRNA:   3'- gCGGC-CGuuCGCGcuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 11515 0.7 0.290655
Target:  5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3'
miRNA:   3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12337 0.66 0.464617
Target:  5'- uCGCCGGCGuggccgguuuccucaAGCGUcucGcGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---------------UCGCGcuaCuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12555 0.68 0.394307
Target:  5'- gGCCGGCGgcgccguAGCGCccgc--CCGCGCGc -3'
miRNA:   3'- gCGGCCGU-------UCGCGcuacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12664 0.66 0.460701
Target:  5'- uCGUCGGCcGGCGCGccgGggUCGUcguucGCGu -3'
miRNA:   3'- -GCGGCCGuUCGCGCua-CuuGGCG-----CGC- -5'
24116 3' -59.1 NC_005263.2 + 12704 0.71 0.243961
Target:  5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3'
miRNA:   3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 13006 0.67 0.4133
Target:  5'- gGCCGGUcGGCGUGAU--GCCGaguaGCu -3'
miRNA:   3'- gCGGCCGuUCGCGCUAcuUGGCg---CGc -5'
24116 3' -59.1 NC_005263.2 + 13362 0.67 0.441387
Target:  5'- uGCgGGC-GGCGCGA--AACaCGCGCc -3'
miRNA:   3'- gCGgCCGuUCGCGCUacUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 13554 0.66 0.470524
Target:  5'- gGCaCGGUguacGGGCGCGGcacGAGCgGCGUGu -3'
miRNA:   3'- gCG-GCCG----UUCGCGCUa--CUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 13754 0.67 0.403281
Target:  5'- uGCCGGUuuacacggcgacAGGCGCGucgcuuaAUGGGCCGCauGCu -3'
miRNA:   3'- gCGGCCG------------UUCGCGC-------UACUUGGCG--CGc -5'
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 14102 0.68 0.386342
Target:  5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3'
miRNA:   3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 14171 0.72 0.220184
Target:  5'- gGCCGGCGgccGGUGUGcgcGAGCUGCGUGc -3'
miRNA:   3'- gCGGCCGU---UCGCGCua-CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 15404 0.7 0.286392
Target:  5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3'
miRNA:   3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.