Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 20965 | 0.68 | 0.258218 |
Target: 5'- cUGUcGGacaUC-GCCGACGCgGCUGCGCGc -3' miRNA: 3'- uACA-CC---AGcCGGCUGCG-CGACGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 21181 | 0.68 | 0.284895 |
Target: 5'- ---gGGcCGgacGCgGACGCGCgcgGCGCGGg -3' miRNA: 3'- uacaCCaGC---CGgCUGCGCGa--CGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 21891 | 0.69 | 0.233617 |
Target: 5'- -cGUGGUuucgcgaaCGGCCGccgcauCGCGCggccgccGCGCGGc -3' miRNA: 3'- uaCACCA--------GCCGGCu-----GCGCGa------CGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 22376 | 0.69 | 0.222073 |
Target: 5'- ---aGGUCGuGCaCGGCGCGCaGCGCcaGGa -3' miRNA: 3'- uacaCCAGC-CG-GCUGCGCGaCGCG--CC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 23627 | 0.66 | 0.377756 |
Target: 5'- -cGUGGUCGaGCCGGagcuCGUcGCGCGu -3' miRNA: 3'- uaCACCAGC-CGGCUgc--GCGaCGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 24940 | 0.76 | 0.069864 |
Target: 5'- -gGUGG-CGGCgGACgGCGgUGCGCGGu -3' miRNA: 3'- uaCACCaGCCGgCUG-CGCgACGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 27385 | 0.72 | 0.142386 |
Target: 5'- ---cGG-CGGCCGGCGCGCUGaC-CGGc -3' miRNA: 3'- uacaCCaGCCGGCUGCGCGAC-GcGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 29001 | 0.67 | 0.305566 |
Target: 5'- ---cGGcgCGGCCGACcggcaguGCGUUGCGCa- -3' miRNA: 3'- uacaCCa-GCCGGCUG-------CGCGACGCGcc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 30263 | 0.66 | 0.344662 |
Target: 5'- -aGUcGUCGG-CGAaGCGCUGCGCa- -3' miRNA: 3'- uaCAcCAGCCgGCUgCGCGACGCGcc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 31994 | 0.7 | 0.190326 |
Target: 5'- -aGUGccgucUCGGCUGcCGUaGCUGCGCGGg -3' miRNA: 3'- uaCACc----AGCCGGCuGCG-CGACGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 33233 | 0.7 | 0.185439 |
Target: 5'- -----cUCGGCCGACaaGCUGCGCGa -3' miRNA: 3'- uacaccAGCCGGCUGcgCGACGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 34038 | 0.68 | 0.251876 |
Target: 5'- cAUG-GGcCGGCgCGGCGCGCucaaUGCGCu- -3' miRNA: 3'- -UACaCCaGCCG-GCUGCGCG----ACGCGcc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 35266 | 0.66 | 0.377756 |
Target: 5'- -aGUGG-CaGUgGaAUGCGCUGCGCGa -3' miRNA: 3'- uaCACCaGcCGgC-UGCGCGACGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 37355 | 0.66 | 0.352736 |
Target: 5'- gAUGccGaCGGCCGcAUGCGCgUGCGCGa -3' miRNA: 3'- -UACacCaGCCGGC-UGCGCG-ACGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 37444 | 0.66 | 0.344662 |
Target: 5'- ----cGUCGGCgCG-CGCGguCUGCGCGGc -3' miRNA: 3'- uacacCAGCCG-GCuGCGC--GACGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 37591 | 0.7 | 0.189832 |
Target: 5'- -cGUGcGUCagcucGCCGACGCGCUGguuuaucagccguCGCGGu -3' miRNA: 3'- uaCAC-CAGc----CGGCUGCGCGAC-------------GCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 41169 | 0.77 | 0.062302 |
Target: 5'- -cGUGGgCGGCCGucgucgauacguuGCGCGCUGUGCGu -3' miRNA: 3'- uaCACCaGCCGGC-------------UGCGCGACGCGCc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 41270 | 0.66 | 0.369285 |
Target: 5'- ---cGGUCGuGUCGcCGuCGCUGCGCu- -3' miRNA: 3'- uacaCCAGC-CGGCuGC-GCGACGCGcc -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 44546 | 1.07 | 0.000298 |
Target: 5'- gAUGUGGUCGGCCGACGCGCUGCGCGGc -3' miRNA: 3'- -UACACCAGCCGGCUGCGCGACGCGCC- -5' |
|||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 45303 | 0.79 | 0.040948 |
Target: 5'- uUGUGGUCGcGUaUGACGCGCUGCGCa- -3' miRNA: 3'- uACACCAGC-CG-GCUGCGCGACGCGcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home