miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 3' -61.7 NC_005263.2 + 875 0.66 0.352736
Target:  5'- -cGUGc-CGGCCGGCGCuucGUUcaGCGCGGc -3'
miRNA:   3'- uaCACcaGCCGGCUGCG---CGA--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 1636 0.73 0.124469
Target:  5'- -cGUcGUCGGCgGcguagcccuggAUGCGCUGCGCGGu -3'
miRNA:   3'- uaCAcCAGCCGgC-----------UGCGCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 2682 0.66 0.33672
Target:  5'- uUGUGGUagcugaucgcgCGGCCGcucggcaggugcAUGCGCaGCGCGc -3'
miRNA:   3'- uACACCA-----------GCCGGC------------UGCGCGaCGCGCc -5'
24117 3' -61.7 NC_005263.2 + 2897 0.76 0.078087
Target:  5'- cUGauGUUGGCCGAgaCGUGCUGCGCGGc -3'
miRNA:   3'- uACacCAGCCGGCU--GCGCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 3394 0.68 0.284895
Target:  5'- cGUGUGGugcugcagUCGGCCgccGACGUG-UGCGCGc -3'
miRNA:   3'- -UACACC--------AGCCGG---CUGCGCgACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 6613 0.67 0.291896
Target:  5'- -cGU--UCGG-CGGCGCGCUcgGCGCGGu -3'
miRNA:   3'- uaCAccAGCCgGCUGCGCGA--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 7844 0.7 0.190326
Target:  5'- ---cGGUUGGCCGGcCGCGUcGCGCa- -3'
miRNA:   3'- uacaCCAGCCGGCU-GCGCGaCGCGcc -5'
24117 3' -61.7 NC_005263.2 + 8844 0.68 0.26469
Target:  5'- gAUGUaGGUaGG-CGGCGCGCgggGCGCGa -3'
miRNA:   3'- -UACA-CCAgCCgGCUGCGCGa--CGCGCc -5'
24117 3' -61.7 NC_005263.2 + 9459 0.66 0.369285
Target:  5'- ---aGGUUGGCguCGAUGCGC-GaCGCGGc -3'
miRNA:   3'- uacaCCAGCCG--GCUGCGCGaC-GCGCC- -5'
24117 3' -61.7 NC_005263.2 + 11516 0.66 0.377756
Target:  5'- --cUGGUCGcGCgCGAUGaagGCgGCGCGGu -3'
miRNA:   3'- uacACCAGC-CG-GCUGCg--CGaCGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 12662 0.7 0.185439
Target:  5'- -cGUcGUCGGCCGGCGCGC--CGgGGu -3'
miRNA:   3'- uaCAcCAGCCGGCUGCGCGacGCgCC- -5'
24117 3' -61.7 NC_005263.2 + 12867 0.66 0.369285
Target:  5'- --aUGG--GGCCGGCGUGCgugGUGUGGc -3'
miRNA:   3'- uacACCagCCGGCUGCGCGa--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 13718 0.69 0.227783
Target:  5'- --cUGGUCGccguCCGACGUGCU-CGCGGc -3'
miRNA:   3'- uacACCAGCc---GGCUGCGCGAcGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 14091 0.66 0.352736
Target:  5'- ----uGUCGGCUGGuacCG-GCUGCGCGGc -3'
miRNA:   3'- uacacCAGCCGGCU---GCgCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 14675 0.69 0.239577
Target:  5'- -cGUGGcCGaCCGcuACGCGC-GCGCGGc -3'
miRNA:   3'- uaCACCaGCcGGC--UGCGCGaCGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 14888 0.66 0.377756
Target:  5'- ----uGUCGGCCGA-GUGCagGUGCGGc -3'
miRNA:   3'- uacacCAGCCGGCUgCGCGa-CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 17396 0.66 0.360945
Target:  5'- ---cGGcgCGGCCG-CGCGCcUG-GCGGg -3'
miRNA:   3'- uacaCCa-GCCGGCuGCGCG-ACgCGCC- -5'
24117 3' -61.7 NC_005263.2 + 19115 0.67 0.309244
Target:  5'- ---cGGUCGGCCGcGCcgagcgcaucgccggGCGCUuGCGCGu -3'
miRNA:   3'- uacaCCAGCCGGC-UG---------------CGCGA-CGCGCc -5'
24117 3' -61.7 NC_005263.2 + 19740 0.66 0.377756
Target:  5'- uAUGcGaUCGGCgcUGGCGCGCUG-GCGGc -3'
miRNA:   3'- -UACaCcAGCCG--GCUGCGCGACgCGCC- -5'
24117 3' -61.7 NC_005263.2 + 20803 0.67 0.32124
Target:  5'- ---gGGUCGcGCCGugGUauuucuGCagGCGCGGc -3'
miRNA:   3'- uacaCCAGC-CGGCugCG------CGa-CGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.