Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24117 | 3' | -61.7 | NC_005263.2 | + | 44546 | 1.07 | 0.000298 |
Target: 5'- gAUGUGGUCGGCCGACGCGCUGCGCGGc -3' miRNA: 3'- -UACACCAGCCGGCUGCGCGACGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 45303 | 0.79 | 0.040948 |
Target: 5'- uUGUGGUCGcGUaUGACGCGCUGCGCa- -3' miRNA: 3'- uACACCAGC-CG-GCUGCGCGACGCGcc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 41169 | 0.77 | 0.062302 |
Target: 5'- -cGUGGgCGGCCGucgucgauacguuGCGCGCUGUGCGu -3' miRNA: 3'- uaCACCaGCCGGC-------------UGCGCGACGCGCc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 24940 | 0.76 | 0.069864 |
Target: 5'- -gGUGG-CGGCgGACgGCGgUGCGCGGu -3' miRNA: 3'- uaCACCaGCCGgCUG-CGCgACGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 2897 | 0.76 | 0.078087 |
Target: 5'- cUGauGUUGGCCGAgaCGUGCUGCGCGGc -3' miRNA: 3'- uACacCAGCCGGCU--GCGCGACGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 1636 | 0.73 | 0.124469 |
Target: 5'- -cGUcGUCGGCgGcguagcccuggAUGCGCUGCGCGGu -3' miRNA: 3'- uaCAcCAGCCGgC-----------UGCGCGACGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 27385 | 0.72 | 0.142386 |
Target: 5'- ---cGG-CGGCCGGCGCGCUGaC-CGGc -3' miRNA: 3'- uacaCCaGCCGGCUGCGCGAC-GcGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 33233 | 0.7 | 0.185439 |
Target: 5'- -----cUCGGCCGACaaGCUGCGCGa -3' miRNA: 3'- uacaccAGCCGGCUGcgCGACGCGCc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 12662 | 0.7 | 0.185439 |
Target: 5'- -cGUcGUCGGCCGGCGCGC--CGgGGu -3' miRNA: 3'- uaCAcCAGCCGGCUGCGCGacGCgCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 37591 | 0.7 | 0.189832 |
Target: 5'- -cGUGcGUCagcucGCCGACGCGCUGguuuaucagccguCGCGGu -3' miRNA: 3'- uaCAC-CAGc----CGGCUGCGCGAC-------------GCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 7844 | 0.7 | 0.190326 |
Target: 5'- ---cGGUUGGCCGGcCGCGUcGCGCa- -3' miRNA: 3'- uacaCCAGCCGGCU-GCGCGaCGCGcc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 31994 | 0.7 | 0.190326 |
Target: 5'- -aGUGccgucUCGGCUGcCGUaGCUGCGCGGg -3' miRNA: 3'- uaCACc----AGCCGGCuGCG-CGACGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 22376 | 0.69 | 0.222073 |
Target: 5'- ---aGGUCGuGCaCGGCGCGCaGCGCcaGGa -3' miRNA: 3'- uacaCCAGC-CG-GCUGCGCGaCGCG--CC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 45746 | 0.69 | 0.227783 |
Target: 5'- cUGagGGUUGGCaCGGCcuGCGCUG-GCGGa -3' miRNA: 3'- uACa-CCAGCCG-GCUG--CGCGACgCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 13718 | 0.69 | 0.227783 |
Target: 5'- --cUGGUCGccguCCGACGUGCU-CGCGGc -3' miRNA: 3'- uacACCAGCc---GGCUGCGCGAcGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 21891 | 0.69 | 0.233617 |
Target: 5'- -cGUGGUuucgcgaaCGGCCGccgcauCGCGCggccgccGCGCGGc -3' miRNA: 3'- uaCACCA--------GCCGGCu-----GCGCGa------CGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 14675 | 0.69 | 0.239577 |
Target: 5'- -cGUGGcCGaCCGcuACGCGC-GCGCGGc -3' miRNA: 3'- uaCACCaGCcGGC--UGCGCGaCGCGCC- -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 34038 | 0.68 | 0.251876 |
Target: 5'- cAUG-GGcCGGCgCGGCGCGCucaaUGCGCu- -3' miRNA: 3'- -UACaCCaGCCG-GCUGCGCG----ACGCGcc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 20965 | 0.68 | 0.258218 |
Target: 5'- cUGUcGGacaUC-GCCGACGCgGCUGCGCGc -3' miRNA: 3'- uACA-CC---AGcCGGCUGCG-CGACGCGCc -5' |
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24117 | 3' | -61.7 | NC_005263.2 | + | 8844 | 0.68 | 0.26469 |
Target: 5'- gAUGUaGGUaGG-CGGCGCGCgggGCGCGa -3' miRNA: 3'- -UACA-CCAgCCgGCUGCGCGa--CGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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