miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 3' -61.7 NC_005263.2 + 12662 0.7 0.185439
Target:  5'- -cGUcGUCGGCCGGCGCGC--CGgGGu -3'
miRNA:   3'- uaCAcCAGCCGGCUGCGCGacGCgCC- -5'
24117 3' -61.7 NC_005263.2 + 14091 0.66 0.352736
Target:  5'- ----uGUCGGCUGGuacCG-GCUGCGCGGc -3'
miRNA:   3'- uacacCAGCCGGCU---GCgCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 41270 0.66 0.369285
Target:  5'- ---cGGUCGuGUCGcCGuCGCUGCGCu- -3'
miRNA:   3'- uacaCCAGC-CGGCuGC-GCGACGCGcc -5'
24117 3' -61.7 NC_005263.2 + 19740 0.66 0.377756
Target:  5'- uAUGcGaUCGGCgcUGGCGCGCUG-GCGGc -3'
miRNA:   3'- -UACaCcAGCCG--GCUGCGCGACgCGCC- -5'
24117 3' -61.7 NC_005263.2 + 13718 0.69 0.227783
Target:  5'- --cUGGUCGccguCCGACGUGCU-CGCGGc -3'
miRNA:   3'- uacACCAGCc---GGCUGCGCGAcGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 45746 0.69 0.227783
Target:  5'- cUGagGGUUGGCaCGGCcuGCGCUG-GCGGa -3'
miRNA:   3'- uACa-CCAGCCG-GCUG--CGCGACgCGCC- -5'
24117 3' -61.7 NC_005263.2 + 20965 0.68 0.258218
Target:  5'- cUGUcGGacaUC-GCCGACGCgGCUGCGCGc -3'
miRNA:   3'- uACA-CC---AGcCGGCUGCG-CGACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 8844 0.68 0.26469
Target:  5'- gAUGUaGGUaGG-CGGCGCGCgggGCGCGa -3'
miRNA:   3'- -UACA-CCAgCCgGCUGCGCGa--CGCGCc -5'
24117 3' -61.7 NC_005263.2 + 2897 0.76 0.078087
Target:  5'- cUGauGUUGGCCGAgaCGUGCUGCGCGGc -3'
miRNA:   3'- uACacCAGCCGGCU--GCGCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 37444 0.66 0.344662
Target:  5'- ----cGUCGGCgCG-CGCGguCUGCGCGGc -3'
miRNA:   3'- uacacCAGCCG-GCuGCGC--GACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 19115 0.67 0.309244
Target:  5'- ---cGGUCGGCCGcGCcgagcgcaucgccggGCGCUuGCGCGu -3'
miRNA:   3'- uacaCCAGCCGGC-UG---------------CGCGA-CGCGCc -5'
24117 3' -61.7 NC_005263.2 + 6613 0.67 0.291896
Target:  5'- -cGU--UCGG-CGGCGCGCUcgGCGCGGu -3'
miRNA:   3'- uaCAccAGCCgGCUGCGCGA--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 37591 0.7 0.189832
Target:  5'- -cGUGcGUCagcucGCCGACGCGCUGguuuaucagccguCGCGGu -3'
miRNA:   3'- uaCAC-CAGc----CGGCUGCGCGAC-------------GCGCC- -5'
24117 3' -61.7 NC_005263.2 + 20803 0.67 0.32124
Target:  5'- ---gGGUCGcGCCGugGUauuucuGCagGCGCGGc -3'
miRNA:   3'- uacaCCAGC-CGGCugCG------CGa-CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 31994 0.7 0.190326
Target:  5'- -aGUGccgucUCGGCUGcCGUaGCUGCGCGGg -3'
miRNA:   3'- uaCACc----AGCCGGCuGCG-CGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 21181 0.68 0.284895
Target:  5'- ---gGGcCGgacGCgGACGCGCgcgGCGCGGg -3'
miRNA:   3'- uacaCCaGC---CGgCUGCGCGa--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 30263 0.66 0.344662
Target:  5'- -aGUcGUCGG-CGAaGCGCUGCGCa- -3'
miRNA:   3'- uaCAcCAGCCgGCUgCGCGACGCGcc -5'
24117 3' -61.7 NC_005263.2 + 9459 0.66 0.369285
Target:  5'- ---aGGUUGGCguCGAUGCGC-GaCGCGGc -3'
miRNA:   3'- uacaCCAGCCG--GCUGCGCGaC-GCGCC- -5'
24117 3' -61.7 NC_005263.2 + 22376 0.69 0.222073
Target:  5'- ---aGGUCGuGCaCGGCGCGCaGCGCcaGGa -3'
miRNA:   3'- uacaCCAGC-CG-GCUGCGCGaCGCG--CC- -5'
24117 3' -61.7 NC_005263.2 + 21891 0.69 0.233617
Target:  5'- -cGUGGUuucgcgaaCGGCCGccgcauCGCGCggccgccGCGCGGc -3'
miRNA:   3'- uaCACCA--------GCCGGCu-----GCGCGa------CGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.