miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 3' -61.7 NC_005263.2 + 35266 0.66 0.377756
Target:  5'- -aGUGG-CaGUgGaAUGCGCUGCGCGa -3'
miRNA:   3'- uaCACCaGcCGgC-UGCGCGACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 14675 0.69 0.239577
Target:  5'- -cGUGGcCGaCCGcuACGCGC-GCGCGGc -3'
miRNA:   3'- uaCACCaGCcGGC--UGCGCGaCGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 7844 0.7 0.190326
Target:  5'- ---cGGUUGGCCGGcCGCGUcGCGCa- -3'
miRNA:   3'- uacaCCAGCCGGCU-GCGCGaCGCGcc -5'
24117 3' -61.7 NC_005263.2 + 33233 0.7 0.185439
Target:  5'- -----cUCGGCCGACaaGCUGCGCGa -3'
miRNA:   3'- uacaccAGCCGGCUGcgCGACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 27385 0.72 0.142386
Target:  5'- ---cGG-CGGCCGGCGCGCUGaC-CGGc -3'
miRNA:   3'- uacaCCaGCCGGCUGCGCGAC-GcGCC- -5'
24117 3' -61.7 NC_005263.2 + 24940 0.76 0.069864
Target:  5'- -gGUGG-CGGCgGACgGCGgUGCGCGGu -3'
miRNA:   3'- uaCACCaGCCGgCUG-CGCgACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 41169 0.77 0.062302
Target:  5'- -cGUGGgCGGCCGucgucgauacguuGCGCGCUGUGCGu -3'
miRNA:   3'- uaCACCaGCCGGC-------------UGCGCGACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 45303 0.79 0.040948
Target:  5'- uUGUGGUCGcGUaUGACGCGCUGCGCa- -3'
miRNA:   3'- uACACCAGC-CG-GCUGCGCGACGCGcc -5'
24117 3' -61.7 NC_005263.2 + 44546 1.07 0.000298
Target:  5'- gAUGUGGUCGGCCGACGCGCUGCGCGGc -3'
miRNA:   3'- -UACACCAGCCGGCUGCGCGACGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 34038 0.68 0.251876
Target:  5'- cAUG-GGcCGGCgCGGCGCGCucaaUGCGCu- -3'
miRNA:   3'- -UACaCCaGCCG-GCUGCGCG----ACGCGcc -5'
24117 3' -61.7 NC_005263.2 + 46163 0.68 0.269298
Target:  5'- ---cGGUUGccggcgucgccgguGCCGGCGCGCUcgugcagacGCGCGGc -3'
miRNA:   3'- uacaCCAGC--------------CGGCUGCGCGA---------CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 12867 0.66 0.369285
Target:  5'- --aUGG--GGCCGGCGUGCgugGUGUGGc -3'
miRNA:   3'- uacACCagCCGGCUGCGCGa--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 17396 0.66 0.360945
Target:  5'- ---cGGcgCGGCCG-CGCGCcUG-GCGGg -3'
miRNA:   3'- uacaCCa-GCCGGCuGCGCG-ACgCGCC- -5'
24117 3' -61.7 NC_005263.2 + 45495 0.66 0.360945
Target:  5'- ---cGGUCGGCCuGuCGCGCaauUGgGCGa -3'
miRNA:   3'- uacaCCAGCCGG-CuGCGCG---ACgCGCc -5'
24117 3' -61.7 NC_005263.2 + 37355 0.66 0.352736
Target:  5'- gAUGccGaCGGCCGcAUGCGCgUGCGCGa -3'
miRNA:   3'- -UACacCaGCCGGC-UGCGCG-ACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 875 0.66 0.352736
Target:  5'- -cGUGc-CGGCCGGCGCuucGUUcaGCGCGGc -3'
miRNA:   3'- uaCACcaGCCGGCUGCG---CGA--CGCGCC- -5'
24117 3' -61.7 NC_005263.2 + 2682 0.66 0.33672
Target:  5'- uUGUGGUagcugaucgcgCGGCCGcucggcaggugcAUGCGCaGCGCGc -3'
miRNA:   3'- uACACCA-----------GCCGGC------------UGCGCGaCGCGCc -5'
24117 3' -61.7 NC_005263.2 + 29001 0.67 0.305566
Target:  5'- ---cGGcgCGGCCGACcggcaguGCGUUGCGCa- -3'
miRNA:   3'- uacaCCa-GCCGGCUG-------CGCGACGCGcc -5'
24117 3' -61.7 NC_005263.2 + 3394 0.68 0.284895
Target:  5'- cGUGUGGugcugcagUCGGCCgccGACGUG-UGCGCGc -3'
miRNA:   3'- -UACACC--------AGCCGG---CUGCGCgACGCGCc -5'
24117 3' -61.7 NC_005263.2 + 19740 0.66 0.377756
Target:  5'- uAUGcGaUCGGCgcUGGCGCGCUG-GCGGc -3'
miRNA:   3'- -UACaCcAGCCG--GCUGCGCGACgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.